Uses of Class
org.cdlib.mrt.utility.TException

Packages that use TException

Package	Description
org.cdlib.mrt.cloud
org.cdlib.mrt.core
org.cdlib.mrt.db
org.cdlib.mrt.formatter
org.cdlib.mrt.log.test
org.cdlib.mrt.log.utility
org.cdlib.mrt.security
org.cdlib.mrt.test
org.cdlib.mrt.tools
org.cdlib.mrt.tools.loader
org.cdlib.mrt.tools.loader.test
org.cdlib.mrt.utility

Uses of TException in org.cdlib.mrt.cloud

Methods in org.cdlib.mrt.cloud that throw TException

Modifier and Type	Method	Description
void	VersionMap.add(ManInfo info)
protected void	ManifestStr.addComponent(FileComponent component)
File	VersionData.addComponentFile(int versionID, File versionDir, FileComponent component)
int	VersionData.addComponentsList(int versionID, File versionDir)
protected void	ManifestStr.addObject()
protected void	ManifestStr.addSimple(String ele, String value)
ManInfo	VersionMap.addTest(int versionID, int outVersionID)
void	VersionMap.addVersion(List<FileComponent> components)
protected void	ManifestStr.addVersions()
int	VersionMap.buildAddManifest(String fileURLS, int versionID, File addManifest)	Create an add Manifest in File addManifest
int	VersionData.buildContent()
static void	ManifestStr.buildManifest(VersionMap versionMap, File outFile)
static void	ManifestStr.buildManifest(VersionMap versionMap, OutputStream outStream)
int	VersionData.buildManifests()
static ManInfo	VersionMap.buildManInfo(int versionID, DateState created, List<FileComponent> components)
static VersionMap	ManifestSAX.buildMap(InputStream inStream, LoggerInf logger)
void	MatchMap.compare()
int	VersionData.copyContent(String copyStorageBase, int copyNode, Identifier copyObjectID)
Properties	VersionData.copyVersion(StorageAddClient client, String copyStorageBase, int copyNode, Identifier copyObjectID, File versionManifest)
void	VersionMap.deleteCurrent()
void	VersionMap.fillComponent(FileComponent manifestComponent)
FileComponent	VersionMap.getFileComponent(int versionID, String fileID)
static VersionMap	VersionMapUtil.getMap(String urlS)	Get version map from manifext URL
static ArrayList<FileComponent>	VersionMap.getMergeComponents(List<FileComponent> updateComponents, List<FileComponent> currentComponents, String[] deleteList)
ManInfo	VersionMap.getMergeInfo(ManInfo update, String[] deleteList)
ManInfo	VersionMap.getMergeInfoOriginal(ManInfo update, String[] deleteList)
static File	VersionMapUtil.getOutputFile(File outDir, String fileID)
static List<FileComponent>	VersionMapUtil.getVersion(VersionMap map, int versionID)	Get component information from version map
static int	VersionMapUtil.getVersionFiles(VersionMap map, int versionID, String baseURL, File outputDir)	Fill in the outputDir file directory with the content from this version
static VersionMap	VersionMap.getVersionMap(String manifestXMLUrlS)	Get version map from manifext URL
VersionMap.VersionStats	VersionMap.getVersionStats(int versionID)
boolean	VersionMap.isMatch(VersionMap testMap)
boolean	VersionMap.isMatch(FileComponent matchComponent, FileComponent manifestComponent)
boolean	VersionMap.isMatchComponents(List<FileComponent> components, List<FileComponent> tcomponents)
boolean	VersionMap.isThisSubset(VersionMap testMap)	Is testMap VersionMap a subset of this.versionMap
static void	ManifestSAX.main(String[] args)
static void	ManifestSAX.mainOriginal(String[] args)
static void	ManifestSAX.mainTestBadMan(String[] args)
void	ManifestSAX.process(InputStream input)
void	VersionData.saveComponentContent(int versionID, File componentFile, String id, String name)
void	VersionMap.setCloudComponent(FileComponent manifestComponent, boolean doFill)
void	ManInfo.setComponents(int versionID, List<FileComponent> componentList)
protected void	VersionMap.stubFromManList(ManInfo manInfo, int stubVersion)
protected void	VersionMap.stubFromVersions(int stubVersion)
void	VersionMap.stubVersion(int stubVersion)
void	VersionMap.updateVersion(List<FileComponent> components, String[] deleteList)
protected void	VersionMap.validateManInfo(ManInfo info)
void	VersionMap.validateVersion()

Constructors in org.cdlib.mrt.cloud that throw TException

Modifier	Constructor	Description
	ManifestSAX(LoggerInf logger)
	ManifestStr(VersionMap versionMap, File outFile)
	ManifestStr(VersionMap versionMap, OutputStream outStream)
	MatchMap(VersionMap mapOne, VersionMap mapTwo, LoggerInf logger)
	VersionData(URL manifestXML, File outputDir, LoggerInf logger)
	VersionData(VersionMap map, File outputDir, LoggerInf logger)
	VersionData(Identifier objectID, String storageBase, int node, File outputDir, LoggerInf logger)
	VersionMap(VersionMap inMap)
	VersionMap(Identifier objectID, LoggerInf logger)

Uses of TException in org.cdlib.mrt.core

Methods in org.cdlib.mrt.core that return TException

Modifier and Type	Method	Description
TException	ComponentContent.makeGeneralTException(LoggerInf logger, String msg, Exception ex)	create TException and do appropriate logger
static TException	ValidateStorageCmdParms.setException(String header)

Methods in org.cdlib.mrt.core that throw TException

Modifier and Type	Method	Description
void	FileComponent.addMessageDigest(String digest, String algorithmS)	Save a new MessageDigest for this file
Properties	StorageAddClient.addVersion(String link, int nodeID, Identifier objectID, String localContext, String localID, String manifestS, String urlS, Long size, String type, String value, String formatType, int timeout, int retry)
Properties	StorageAddClient.addVersion(String link, String nodeIDS, String objectIDS, String localContext, String localID, String manifestS, String urlS, String validate, String formatType)
void	ComponentContent.buildComponents(Manifest manifest, InputStream manifestInputStream)	From a post manifest InputStream Return a VersionContent object
static String	DataciteConvert.dataCite2dc(String dataCite, LoggerInf logger)	Convert DataCite format to standard dc
static String	DC.dataCite2dc(String dataCite, LoggerInf logger)	Convert DataCite format to standard dc
static void	DC.dumpList(String header, Element root, String path, LoggerInf logger)
protected Integer	Checkm.getCol(Checkm.ColMap val)	From column content type get column position
static String	Checkm.getColumns(String header)
static LinkedHashList	DC.getDC(Document metsDoc, int maxDMDSec, LoggerInf logger)	Build a LinkedHashList containing DC values extracted from METS
static void	DC.getDCFromModsMets(LinkedHashList<String,String> returnList, Document mets, LoggerInf logger)	From a DOM METS containing MODS return list of DC values
static String[]	ManifestRowCheckmAbs.getHeaders(String outputProfile, String[] profiles, String[] columns)
protected static int	ValidateStorageCmdParms.getInteger(String header, String value)	Convert String to numeric and throw exception if invalid
String	Checkm.getLine(FileComponent fileComponent)	Build output manifest line from fileComponent
String	ManifestRowCheckmAbs.getLine()
String	ManifestRowInf.getLine()	Build a Manifest line for output to a manifest file
static Manifest	Manifest.getManifest(LoggerInf logger, String profile, ManifestRowAbs.ManifestType rowType)	Manifest Factory
static Manifest	Manifest.getManifest(LoggerInf logger, ManifestRowAbs.ManifestType rowType)	Manifest Factory
static ManifestRowInf	ManifestRowAbs.getManifestRow(ManifestRowAbs.ManifestType type, String outputProfile, LoggerInf logger)	Based on ManifestRow type return requested ManifestRow handler
static ManifestRowInf	ManifestRowAbs.getManifestRow(ManifestRowAbs.ManifestType type, LoggerInf logger)	Based on ManifestRow type return requested ManifestRow handler
ManifestRowCheckmAbs	ManifestRowAdd.getManifestRow()
ManifestRowCheckmAbs	ManifestRowBatch.getManifestRow()
abstract ManifestRowCheckmAbs	ManifestRowCheckmAbs.getManifestRow()
ManifestRowCheckmAbs	ManifestRowCheckmAbs.getManifestRow(String line)
ManifestRowInf	ManifestRowInf.getManifestRow(String line)	Get ManifestRow object based on passed line
ManifestRowCheckmAbs	ManifestRowIngest.getManifestRow()
ManifestRowCheckmAbs	ManifestRowObject.getManifestRow()
org.apache.tika.mime.MediaType	Tika.getMediaType(File componentFile)	Return MediaType just using File
org.apache.tika.mime.MediaType	Tika.getMediaType(InputStream componentStream, String filenameWithExtension)	Returns a tika Media based on the input stream and file Extension
static void	DC.getMetsDC(LinkedHashList<String,String> returnList, Document mets, LoggerInf logger)	Extract DC from METS
static void	DC.getMetsDC(LinkedHashList<String,String> returnList, NodeList list, LoggerInf logger)	Extract DC from METS
static String	DC.getMetsMods(Document mets, LoggerInf logger)	Create a MODS xml extracting from METS
String	Tika.getMimeType(File componentFile)	Get mime type using just a File
String	Tika.getMimeType(InputStream componentStream, String fileID)
static LinkedHashList<String,String>	DC.getOAIDC(LinkedHashList<String,String> returnList, String dc, LoggerInf logger)	From a string DC build list of DC values
static ManifestBuild.PropInfo	ManifestBuild.getPostManifest(String fileURLS, File sourceDir, File postManifest)	Build a POST manifest
static ManifestBuild.PropInfo	ManifestBuild.getPostManifest(String fileURLS, File sourceDir, File postManifest, LoggerInf logger)	Build a POST manifest
static String	Checkm.getPrefix(String header)
static String	Checkm.getProfile(String header)
Enumeration<ManifestRowInf>	Manifest.getRows(File inputManifestFile)	Enumeration handling
Enumeration<ManifestRowInf>	Manifest.getRows(InputStream inputStream)	Enumeration handling
static ThreadHandler	ThreadHandler.getThreadHandler(long pollTime, int threadCnt, LoggerInf logger)
static Tika	Tika.getTika(LoggerInf logger)
void	Checkm.handleEOF(String prevLine)	Raise error if #%eof not found as last entry in manifest
void	ManifestRowCheckmAbs.handleEOF(String prevLine)
void	ManifestRowInf.handleEOF(String prevLine)	Any specialized EOF handling required.
void	Checkm.handleHeaders(String[] comments, String[] profiles)	Validate Profile from external manifest headers
void	ManifestRowCheckmAbs.handleHeaders(String[] comments)
void	ManifestRowInf.handleHeaders(String[] headers)	Process all manifest headers beginning with the form #% The headers exist before any processed manifest line
protected void	ManifestBuild.initialize(TFrame mFrame)
static boolean	DC.isDC(Element fileNode, LoggerInf logger)
protected String[]	Checkm.matchPat(String data)
static String	DC.mods2dc(String mods, LoggerInf logger)	Convert a MODS XML into a DC XML String
void	Manifest.openOutput(File outputManifestFile)	Output file to write new manifest
void	Manifest.openOutput(OutputStream outputStream)	Use output stream for writing out manifest
protected Properties	StorageAddClient.processResponse(org.apache.http.HttpResponse response)
org.apache.http.HttpResponse	StorageAddClient.sendAddMultipart(String link, Integer nodeID, Identifier objectID, String localContext, String localID, File manifest, String url, Long size, String type, String value, String formatType)
org.apache.http.HttpResponse	StorageAddClient.sendAddMultipart(String link, Integer nodeID, Identifier objectID, String localContext, String localID, File manifest, String url, Long size, String type, String value, String formatType, int timeout)
org.apache.http.HttpResponse	StorageAddClient.sendAddMultipartRetry(String link, Integer nodeID, Identifier objectID, String localContext, String localID, File manifestFile, String urlS, Long size, String type, String value, String formatType, int timeout, int retry)	getObject with timeout and retry
Properties	StorageAddClient.sendAddMultipartRetryProperties(String link, Integer nodeID, Identifier objectID, String localContext, String localID, File manifestFile, String urlS, Long size, String type, String value, String formatType, int timeout, int retry)	Send a multipart storage add request
org.apache.http.HttpResponse	StorageAddClient.sendAddPost(String link, int nodeID, Identifier objectID, String context, String identifier, File manifest, String url, Long size, String type, String value, String formatType)
protected void	Checkm.sequenceColumns(String columnsS)	Build tables with sequencing of known columns
void	PingState.set(boolean doGC)	Set system values in ping response
protected void	Checkm.setCol(String[] disp, Checkm.ColMap val, String value)	Set col output display of content for column exists
protected void	Manifest.setFile(File manifestFile)	Set manifest file as saved buffered reader
void	FileComponent.setFirstMessageDigest(String digest, String algorithmS)	Save a new MessageDigest for this file as only digest
protected void	Checkm.setHeaders(String[] comments)	Process the local headers to define row organization and content
protected void	Manifest.setInputStream(InputStream inStream)	Convert input stream to buffered reader
static String	DC.setModsNS(String xml)	Set a V3 name space in the MODS xml
protected void	Checkm.setPrefix(String comment)	Parse prefix line
void	Checkm.setRow(FileComponent fileComponent, String line)	From manifest line parse out fileComponent elements and set those values in fileComponent
void	ManifestRowCheckmAbs.setRow(String line)
void	ManifestRowInf.setRow(String line)	Process Manifest line.
void	FileComponent.setSize(String sizeS)	File size as string
void	Tika.setTika(FileComponent component, File testFile, String fileID)	Set mime type using Tika
void	Tika.setTika(FileComponent component, InputStream stream, String fileID)	Set mime type using Tika
void	FileComponent.setURL(String linkS)	Set link to file passed as string
void	ThreadHandler.shutdown()
static String	Checkm.squeezeHeader(String name, String header)
static void	ValidateStorageCmdParms.testArchiveType(String archiveType)
static void	ValidateStorageCmdParms.testContext(String context)
static void	ValidateStorageCmdParms.testFileName(String fileName)
static void	ValidateStorageCmdParms.testLocalID(String localID)
static void	ValidateStorageCmdParms.testNodeID(int nodeID)
static void	ValidateStorageCmdParms.testObjectID(Identifier objectID)
static void	ValidateStorageCmdParms.testVersionID(Integer versionID)
static String	ValidateStorageCmdParms.validateContext(String context)	Validate context (ingest profile, access group ...)
static String	ValidateStorageCmdParms.validateFileName(String fileName)	Validate file name
static String	ValidateStorageCmdParms.validateLocalID(String localID)	Validate local identifier
static int	ValidateStorageCmdParms.validateNodeID(String nodeID)	Validate and convert nodeID
static Identifier	ValidateStorageCmdParms.validateObjectID(String objectIDS)	Validate and convert Object Identifier
static int	ValidateStorageCmdParms.validateVersionID(String versionID)	Validate and convert versionID
void	Manifest.write(String localLine)	Write this line to output
void	Manifest.write(ManifestRowInf row)	Write a line to output manifest
void	Manifest.writeEOF()
void	Manifest.writeHeaders()
void	Manifest.writeLines(String[] lines)

Constructors in org.cdlib.mrt.core that throw TException

Modifier	Constructor	Description
	Checkm(LoggerInf logger, String[] manifestComments)	Constructor
	ComponentContent(List<FileComponent> componentList)
	ComponentContent(LoggerInf logger, Manifest manifest, InputStream manifestInputStream)
	Identifier(String value)	Constructor - Namespace default is ARK
	Identifier(String value, Identifier.Namespace namespace)	Constructor
	Manifest(LoggerInf logger, ManifestRowInf rowFactory)	Constructor
	ManifestRowAdd(LoggerInf logger)
	ManifestRowAdd(LoggerInf logger, Checkm checkm)
	ManifestRowBatch(String outputProfile, LoggerInf logger)
	ManifestRowBatch(LoggerInf logger)
	ManifestRowBatch(LoggerInf logger, Checkm checkm)
	ManifestRowCheckmAbs(String outputProfile, LoggerInf logger, String[] profiles, String[] cols)
	ManifestRowCheckmAbs(LoggerInf logger, String[] profiles, String[] cols)
	ManifestRowCheckmAbs(LoggerInf logger, Checkm checkm)
	ManifestRowIngest(LoggerInf logger)
	ManifestRowIngest(LoggerInf logger, Checkm checkm)
	ManifestRowObject(LoggerInf logger)
	ManifestRowObject(LoggerInf logger, Checkm checkm)
	MessageDigest(String value, String algorithmS)	Constructor This form of the constructor requires a supported form of the checksum type after normalization.
	MessageDigest(String value, MessageDigestType algorithm)	Constructor
	PingState(String serviceName)
	PingState(String serviceName, boolean doGC)	Initialize Ping state
protected	ThreadHandler(long pollTime, int threadCnt, LoggerInf logger)
	Tika(LoggerInf logger)

Uses of TException in org.cdlib.mrt.db

Methods in org.cdlib.mrt.db that throw TException

Modifier and Type	Method	Description
void	DPRFileDB.attemptReconnection()
static Properties[]	DBUtil.cmd(Connection connection, String cmd, LoggerInf logger)
static boolean	DBUtil.exec(Connection connection, String replaceCmd, LoggerInf logger)
Connection	DPRFileDB.getConnection(boolean autoCommit)
Connection	DPRFileDB.getConnectionOriginal(boolean autoCommit)
Connection	DPRFileDB.getConnectionWithReconnect(boolean autoCommit)
static DBConnectionPool	DBConnectionPool.getDBConnectionPool(String url, String user, String password)
Connection	DPRFileDB.getSingleConnection(boolean autoCommit)
static String	DPRFileDB.retrieveENC(String key)
protected void	DPRFileDB.setPool()
static int	DBUtil.update(Connection connection, String replaceCmd, LoggerInf logger)

Constructors in org.cdlib.mrt.db that throw TException

Modifier	Constructor	Description
protected	DBConnectionPool(String url, String user, String password)
	DPRFileDB(LoggerInf logger, String dburl, String dbuser, String dbpass)
	DPRFileDB(LoggerInf logger, Properties frame)

Uses of TException in org.cdlib.mrt.formatter

Methods in org.cdlib.mrt.formatter that throw TException

Modifier and Type	Method	Description
protected void	NSMap.addLine(String line)
protected void	FormatterAbs.addLvl(int lvl, PrintStream stream)	Indent handling for output display stream
protected void	NSMap.buildReaderFile()
protected void	NSMap.buildResourceTable()
void	FormatterAbs.format(StateInf state, PrintStream stream)
void	FormatterInf.format(StateInf state, PrintStream stream)	Create ouput format.
void	JSONFormatter.format(StateInf stateFile, PrintStream stream)
void	XHTMLFormatter.format(StateInf stateFile, PrintStream stream)
protected void	FormatterAbs.formatClass(Class c, Object object, int lvl, PrintStream stream)	Format this class.
void	FormatterAbs.formatNamedNode(String name, Object obj, boolean isFirst, int lvl, PrintStream stream)	Format a node.
void	FormatterAbs.formatNode(Object obj, boolean isFirst, int lvl, PrintStream stream)
protected void	FormatterAbs.formatObject(Object object, int lvl, PrintStream stream)	Use reflection to format this object
static ANVLFormatter	FormatterAbs.getANVLFormatter(LoggerInf logger)	get ANVL formatter
static FormatterInf	FormatterAbs.getFormatter(FormatterInf.Format formatType, LoggerInf logger)	Get typped formatter
String	XMLMapper.getHeader(String name)	return a header for the XML - this property is required
String	XMLMapper.getIDName()	Get name of ID used for this namespace
static JSONFormatter	FormatterAbs.getJSONFormatter(String mapperName, LoggerInf logger)	get JSON formatter
static JSONFormatter	FormatterAbs.getJSONFormatter(LoggerInf logger)	get JSON formatter
protected String	FormatterAbs.getMethodName(Method method)	Standard name generator for elements.
String	XMLMapper.getName(String name)	Get this name with namespace if supplied.
String	XMLMapper.getNameSpacePrefix()
String	XMLMapper.getNameSpaceURI()
Properties	XMLMapper.getProperties(String resourceName)	Gets a resource using the class loader
String	XMLMapper.getResourceName()	Get name of ID used for this namespace
String	XMLMapper.getSemanticBase()
String	XMLMapper.getXHTML()
static XHTMLFormatter	FormatterAbs.getXHTMLFormatter(String mapperName, LoggerInf logger)	get XHTML formatter
static XHTMLFormatter	FormatterAbs.getXHTMLFormatter(LoggerInf logger)	get XHTML formatter
static XMLFormatter	FormatterAbs.getXMLFormatter(String mapperName, LoggerInf logger)	get XML formatter
static XMLFormatter	FormatterAbs.getXMLFormatter(LoggerInf logger)	get XML formatter
static XMLMapper	XMLMapper.getXMLMapper(String resourceName, StateInf state)
protected boolean	FormatterAbs.isDisplayableClass(Class c)
protected boolean	FormatterAbs.isDisplayMethod(Method m)	Critical routine to determine if a method should be displayed Must begin with get.
protected void	ANVLFormatter.print(String name, String value, boolean isFirst, boolean isNumeric, int lvl, PrintStream stream)
protected abstract void	FormatterAbs.print(String name, String value, boolean isFirst, boolean isNumeric, int lvl, PrintStream stream)	Formatted entry value
protected void	JSONFormatter.print(String name, String value, boolean isFirst, boolean isNumeric, int lvl, PrintStream stream)
protected void	XHTMLFormatter.print(String name, String value, boolean isFirst, boolean isNumeric, int lvl, PrintStream stream)
protected void	XMLFormatter.print(String name, String value, boolean isFirst, boolean isNumeric, int lvl, PrintStream stream)
protected int	ANVLFormatter.printBegin(StateInf state, PrintStream stream)
protected abstract int	FormatterAbs.printBegin(StateInf state, PrintStream stream)	Beginning of formatting
protected int	JSONFormatter.printBegin(StateInf state, PrintStream stream)
protected int	XHTMLFormatter.printBegin(StateInf state, PrintStream stream)
protected int	XMLFormatter.printBegin(StateInf state, PrintStream stream)
protected void	ANVLFormatter.printClose(String name, int lvl, PrintStream stream)
protected abstract void	FormatterAbs.printClose(String name, int lvl, PrintStream stream)	Closing element entry.
protected void	JSONFormatter.printClose(String name, int lvl, PrintStream stream)
protected void	XHTMLFormatter.printClose(String name, int lvl, PrintStream stream)
protected void	XMLFormatter.printClose(String name, int lvl, PrintStream stream)
protected void	ANVLFormatter.printEnd(PrintStream stream)
protected abstract void	FormatterAbs.printEnd(PrintStream stream)	End of formatting
protected void	JSONFormatter.printEnd(PrintStream stream)
protected void	XHTMLFormatter.printEnd(PrintStream stream)
protected void	XMLFormatter.printEnd(PrintStream stream)
protected void	ANVLFormatter.printEnd_Concatenation(PrintStream stream)	Example of ANVL output using concatenation of identical keys using ;
void	ANVLFormatter.printStart(String name, boolean isFirst, int lvl, PrintStream stream)
protected abstract void	FormatterAbs.printStart(String name, boolean isFirst, int lvl, PrintStream stream)	Beginning element entry.
protected void	JSONFormatter.printStart(String name, boolean isFirst, int lvl, PrintStream stream)
protected void	XHTMLFormatter.printStart(String name, boolean isFirst, int lvl, PrintStream stream)
protected void	XMLFormatter.printStart(String name, boolean isFirst, int lvl, PrintStream stream)
void	FormatterAbs.processList(Method mGetList, Object objList, boolean firstNode, int lvl, PrintStream stream)	Using reflection, process a list of values.
protected String	FormatterAbs.runStringMethod(Method meth, String name, Object object)	Runs toString() for this method
protected File	JSONFormatter.transform(File xmlFile)
protected File	XHTMLFormatter.transform(File xmlFile)
protected void	NSMap.validate()
protected void	FormatterAbs.write(String line, PrintStream stream)	Used by formatter class to write to the display output
protected void	FormatterAbs.writeln(String line, PrintStream stream)	Used by formatter class to write a line to the display output
protected void	JSONFormatter.writeStream(File formatFile, PrintStream stream)
protected void	XHTMLFormatter.writeStream(File formatFile, PrintStream stream)

Constructors in org.cdlib.mrt.formatter that throw TException

Modifier	Constructor	Description
	ANVLFormatter(LoggerInf logger)
	FormatterAbs(LoggerInf logger)	Constructor
	JSONFormatter(String mapperName, LoggerInf logger)
	JSONFormatter(LoggerInf logger)
	NSMap(String resourceName, LoggerInf logger)
	XHTMLFormatter(String mapperName, LoggerInf logger)
	XHTMLFormatter(LoggerInf logger)
	XMLFormatter(String mapperName, LoggerInf logger)
	XMLFormatter(LoggerInf logger)
protected	XMLMapper(String resourceName, StateInf state)	State must be explicitly included match an instance to assign a type name The type name is used for matchin resource properties

Uses of TException in org.cdlib.mrt.log.test

Methods in org.cdlib.mrt.log.test that throw TException

Modifier and Type	Method	Description
void	TestElement.doTest()
void	TestLevel.doTest()
void	TestUse.doTest()
void	TestLevel.doTest2()
static void	TestElement.main(String[] args)
static void	TestLevel.main(String[] args)
static void	TestUse.main(String[] args)

Constructors in org.cdlib.mrt.log.test that throw TException

Modifier	Constructor	Description
	TestElement()
	TestLevel()
	TestUse()

Uses of TException in org.cdlib.mrt.log.utility

Methods in org.cdlib.mrt.log.utility that throw TException

Modifier and Type	Method	Description
static void	AddStateEntryGen.addEntry(String levelS, org.json.JSONObject jsonEntry)	Add one or more JSON entries in log4j2
void	AddStateEntry.addLog(String levelS, String logKey)
void	AddStateEntryGen.addLog(String levelS, String logKey)
static void	AddStateEntryGen.addLogJson(org.apache.logging.log4j.Level level, String logKey, org.json.JSONObject jsonState)
static org.json.JSONObject	AddStateEntry.addLogKey(String logKey, org.json.JSONObject jsonState)
static org.json.JSONObject	AddStateEntryGen.addLogKey(String logKey, org.json.JSONObject jsonState)
void	AddStateEntryGen.addLogLevel(org.apache.logging.log4j.Level logLevel, String logKey)
void	AddStateEntry.addLogStateEntry(String logKey)
static void	AddStateEntry.addLogStateEntry(String logKey, org.json.JSONObject jsonState)
static void	AddStateEntry.addLogStateEntry(org.apache.logging.log4j.Level level, String logKey, org.json.JSONObject jsonState)
void	AddStateEntryGen.addLogStateEntry(String logKey)
void	AddStateEntryGen.addLogStateEntry(String levelS, String logKey)
static void	AddStateEntryGen.addLogStateEntry(String levelS, String logKey, org.json.JSONObject jsonState)
static void	AddStateEntryGen.addLogStateEntry(String logKey, org.json.JSONObject jsonState)
org.json.JSONObject	AddStateEntry.buildContent()
org.json.JSONObject	AddStateEntryGen.buildContent()
org.json.JSONObject	AddStateEntry.buildID()
org.json.JSONObject	AddStateEntryGen.buildID()
org.json.JSONObject	AddStateEntryGen.buildProperties()
org.json.JSONObject	AddStateEntry.buildService()
org.json.JSONObject	AddStateEntryGen.buildService()
org.json.JSONObject	AddStateEntry.buildStateJSON()
org.json.JSONObject	AddStateEntryGen.buildStateJSON()
static String	Log4j2Util.getRootLevel()
AddStateEntry	AddStateEntry.setArk(String objectIDS)
AddStateEntryGen	AddStateEntryGen.setArk(String objectIDS)
static void	Log4j2Util.setLoggerLevel(String loggerName, String levelS)
static void	Log4j2Util.setLoggerLevel(String loggerName, org.apache.logging.log4j.Level level)
AddStateEntryGen	AddStateEntryGen.setOwner(String ownerIDS)
static void	Log4j2Util.setRootLevel(String levelS)
static void	Log4j2Util.setRootLevel(org.apache.logging.log4j.Level level)

Uses of TException in org.cdlib.mrt.security

Methods in org.cdlib.mrt.security that throw TException

Modifier and Type	Method	Description
static ArrayList<String>	LDAPUtil.contains(String uid, String password, String host, String searchBase, String filter)
static String	SecurityUtil.decodeBase64(String str)
String	DesEncrypter.decrypt(String str)
static String	SecurityUtil.desDecrypt(String text, String tkey)	Use DES to decrypt a string
static String	SecurityUtil.desEncrypt(String text, String tkey)	Use DES to encrypt a string
static String	SecurityUtil.encodeBase64(byte[] byteArray)
static String	SecurityUtil.encodeBase64(InputStream inputStream)
static String	SecurityUtil.encodeBase64(String str)
String	DesEncrypter.encrypt(String str)
static String	SecurityUtil.encrypt(String password)	Do an MD5 encryption on a string Note that the encryption does utf-8 conversion of password to byte array
static String	SecurityUtil.encrypt(String password, String type)	Do an MD5 encryption on a string Note that the encryption does utf-8 conversion of password to byte array
List<String>	CertsLDAP.extractProfiles(String user, String pwd, String searchId)
static List<String>	LDAPUtil.extractProfiles(String host, String uid, String password, String searchId)
LinkedHashList<String,String>	CertsLDAP.find(String user, String pwd)
static List<String>	LDAPUtil.getClassNames(String host, String uid, String password, String searchId)
List<String>	CertsLDAP.getNames(String user, String pwd, String searchId)
String	CertsLDAP.getProfile(String user, String pwd, String mnemonic)
static String	LDAPUtil.getProfile(String host, String uid, String password, String className)
static LinkedHashList<String,String>	LDAPUtil.getUserProperties(String host, String uid, String password)
boolean	CertsLDAP.isAuthorized(String uid, String password, String className, String searchId)
static LinkedHashList<String,String>	LDAPUtil.search(String uid, String password, String host, String[] returnedAtts, String searchBase, String filter)

Constructors in org.cdlib.mrt.security that throw TException

Modifier	Constructor	Description
	CertsLDAP(File certFile, String hostName)

Uses of TException in org.cdlib.mrt.test

Methods in org.cdlib.mrt.test that throw TException

Modifier and Type	Method	Description
protected static void	TestFileUtil.addTestFile(File tempDir, String fileName)	Add file at this directory level - ending with .txt Note that file content is name of file.
static File	TestFileUtil.copy2Temp(File sourceFile)	Return a temp copy of a passed file
static void	TestFileUtil.copyDirectory(File sourceLocation, File targetLocation)	Copy all files in a directory to another directory (will overwrite)
static void	TestFileUtil.copyFile(String fileName, File sourceDirectory, File targetDirectory)	Copy file from one directory to another
static void	TestFileUtil.copyReg(String fileExp, File sourceDirectory, File targetDirectory)	Copy files in one directory to another directory based on matchin a regular expression.
static long	TestFileUtil.extractFileCnt(File extFile, long dflt)
static void	TestFileUtil.file2file(File sourceFile, File targetFile)	Copy one file to another
static String	TestFileUtil.file2String(File extractFile)	Extract the value of file to a string (utf-8)
static String	TestFileUtil.file2String(File extractFile, String encType)	Extract the value of file to a string (utf-8)
static void	TestFileUtil.getDirectoryFiles(File sourceLocation, Vector<File> files)	Build list of files for a directory
static String[]	TestFileUtil.getLinesFromFile(File splitFile)	Return array of nonempty lines from a file
static String[]	TestFileUtil.getLinesFromURL(LoggerInf logger, String urlS)	Return array of nonempty lines from url content
static File	TestFileUtil.getTempDir(String directoryPrefix)	Get a temporary directory
static File	TestFileUtil.getTempDir(String directoryPrefix, LoggerInf logger)	Get a temporary directory
static File	TestFileUtil.getTempFile(String prefix, String suffix)	Create a temp file using prefix and suffix (THREAD SAFE)
static void	TestFileUtil.incFile(File incFile, int inc)	Increment a stored file value and save back to file
static void	TestFileUtil.populateTest(File tempDir, String name, int lvl, int maxlvl)	Create a test directory of form: A AA AB AC ...
static void	TestFileUtil.stream2File(InputStream inStream, File outFile)	Create a file from a stream
static void	TestFileUtil.stream2Stream(InputStream inStream, OutputStream outStream)	Copy input stream to output stream
static void	TestFileUtil.string2File(File createFile, String fileContent)	Create a file containing this string value (utf-8)
static void	TestFileUtil.updateDirectory(File sourceLocation, File targetLocation)	Copy all files in a directory to another directory (will not overwrite)
static void	TestFileUtil.url2File(LoggerInf m_logger, String urlS, File outFile)	Get content referenced by a url and save in a file
static void	TestFileUtil.url2File(LoggerInf m_logger, String urlS, File outFile, int retry)	Get content referenced by a url and save in a file
static void	TestFileUtil.url2File(LoggerInf m_logger, URL fileURL, File outFile)	Get content referenced by a url and save in a file
static void	TestFileUtil.url2File(LoggerInf m_logger, URL fileURL, File outFile, int retry)	Get content referenced by a url and save in a file
static void	TestFileUtil.url2OutputStream(String urlS, OutputStream outStream, int retry)	Move url response to output stream
static File	TestFileUtil.url2TempFile(LoggerInf m_logger, String urlS)	get remote file

Uses of TException in org.cdlib.mrt.tools

Methods in org.cdlib.mrt.tools that throw TException

Modifier and Type	Method	Description
String	DefaultConfigResolver.getKey(String parameterName)
String	DefaultConfigResolver.getResolvedStorageNode(long num)
String	UC3ConfigResolver.getResolvedStorageNode(long num)
abstract String	DefaultConfigResolver.getResolvedValue(String parameterName)
String	MockConfigResolver.getResolvedValue(String parameterName)
String	SSMConfigResolver.getResolvedValue(String parameterName)
String	UC3ConfigResolver.getResolvedValue(String parameterName)

Uses of TException in org.cdlib.mrt.tools.loader

Methods in org.cdlib.mrt.tools.loader that throw TException

Modifier and Type	Method	Description
FileComponent	LoaderManifest.addManifestRow(File file, String checksumType, String fileURLS, File sourceDir)	Build a POST manifest
Properties	StoreLoader.addVersion(int nodeID, Identifier objectID, String localContext, String localID, File manifest, Long size, MessageDigest manifestMessageDigest)
int	BatchManifest.buildBatchManifest()
protected FileComponent	LoaderManifest.buildBatchManifestRow()	Build the METS component to be added to the component list for an individual object manifest
protected int	BatchManifest.buildContentManifests()
protected LoaderManifest	BatchManifest.buildLoaderManifest(int item)
int	LoaderManifest.buildManifest(ManifestRowAbs.ManifestType manifestType)
void	BatchLoader.end()
void	StoreLoader.end()
protected Properties	BatchLoader.getDummyIngestStatus()
protected Properties	BatchLoader.getIngestStatus(org.apache.http.HttpResponse response)
protected void	BatchLoader.initialize(TFrame fw)
protected void	StoreLoader.initialize(TFrame fw)
protected void	BatchLoader.initializeBatchLoader()
protected void	StoreLoader.initializeStoreLoader()
void	BatchLoader.process(String line, Properties processProp)	Process an incoming line which contains 1) ark 2) sequence number Use the ark for issuing an addVersion to a storage service
void	StoreLoader.process(String line, Properties processProp)	Process an incoming line which contains 1) ark 2) sequence number Use the ark for issuing an addVersion to a storage service
protected LoaderManifest	StoreLoader.processManifest(String dirName, FileComponent batchComponent, File extractDirectory, String localID, String primaryID)
void	BatchManifest.run()
static BatchManifest	BatchManifest.run(String checksumType, Vector<LoaderInfo> extractDirectories, File outputManifestDirectory, URL outputManifestBaseURL, URL componentURLBase, LoggerInf logger)
void	LoaderManifest.run(ManifestRowAbs.ManifestType manifestType)
static LoaderManifest	LoaderManifest.run(ManifestRowAbs.ManifestType manifestType, String checksumType, FileComponent batchComponent, File dataDir, File loaderManifestFile, URL componentURLBase, LoggerInf logger)
protected Properties	BatchLoader.sendIngest(URL ingestURL, String profile, File manifestFile)	Send constructed request to ingest
protected org.apache.http.HttpResponse	BatchLoader.sendIngestMultipart(String ingestID, URL url, File ingestPackage, String profileIn, String type)	Send ingest request
long	LoaderManifest.setComponents()	Build a POST manifest

Constructors in org.cdlib.mrt.tools.loader that throw TException

Modifier	Constructor	Description
	BatchLoader(TFrame framework)
	BatchManifest(String checksumType, Vector<LoaderInfo> extractDirectories, File outputManifestDirectory, URL outputManifestBaseURL, URL componentURLBase, LoggerInf logger)
	LoaderManifest(String checksumType, FileComponent batchComponent, File dataDir, File loaderManifest, URL componentURLBase, LoggerInf logger)
	StoreLoader(TFrame framework)

Uses of TException in org.cdlib.mrt.tools.loader.test

Methods in org.cdlib.mrt.tools.loader.test that throw TException

Modifier and Type	Method	Description
void	BatchLoaderTest.testBatchLoader()
void	StoreLoaderTest.testStoreLoader()

Uses of TException in org.cdlib.mrt.utility

Subclasses of TException in org.cdlib.mrt.utility

Modifier and Type	Class	Description
static class	TException.CONCURRENT_UPDATE	CONCURRENT_UPDATE subclass See TExceptionEnum value for description
static class	TException.EXTERNAL_SERVICE_UNAVAILABLE	EXTERNAL_SERVICE_UNAVAILABLE subclass See TExceptionEnum value for description
static class	TException.FIXITY_CHECK_FAILS	FIXITY_CHECK_FAILS subclass See TExceptionEnum value for description
static class	TException.GATEWAY_TIMEOUT	SQL_EXCEPTION subclass See TExceptionEnum value for description
static class	TException.GENERAL_EXCEPTION	GENERAL_EXCEPTION subclass See TExceptionEnum value for description
static class	TException.INVALID_ARCHITECTURE	INVALID_ARCHITECTURE subclass See TExceptionEnum value for description
static class	TException.INVALID_CONFIGURATION	INVALID_CONFIGURATION subclass See TExceptionEnum value for description
static class	TException.INVALID_DATA_FORMAT	INVALID_DATA_FORMAT subclass See TExceptionEnum value for description
static class	TException.INVALID_OR_MISSING_PARM	INVALID_OR_MISSING_PARM subclass See TExceptionEnum value for description
static class	TException.LOCKING_ERROR	LOCKING_ERROR subclass See TExceptionEnum value for description
static class	TException.NEARLINE_RESTORE_IN_PROCESS	SQL_EXCEPTION subclass See TExceptionEnum value for description
static class	TException.REMOTE_IO_SERVICE_EXCEPTION	Attempt to read or write to remote external IO service fails
static class	TException.REQUEST_ELEMENT_UNSUPPORTED	REQUEST_ELEMENT_UNSUPPORTED subclass See TExceptionEnum value for description
static class	TException.REQUEST_INVALID	REQUEST_INVALID subclass See TExceptionEnum value for description
static class	TException.REQUEST_ITEM_EXISTS	REQUEST_ITEM_EXISTS subclass See TExceptionEnum value for description
static class	TException.REQUESTED_ITEM_NOT_FOUND	REQUESTED_ITEM_NOT_FOUND subclass See TExceptionEnum value for description
static class	TException.SQL_EXCEPTION	SQL_EXCEPTION subclass See TExceptionEnum value for description
static class	TException.UNIMPLEMENTED_CODE	UNIMPLEMENTED_CODE subclass See TExceptionEnum value for description
static class	TException.USER_NOT_AUTHENTICATED	USER_NOT_AUTHENTICATED subclass See TExceptionEnum value for description
static class	TException.USER_NOT_AUTHORIZED	USER_NOT_AUTHORIZED subclass See TExceptionEnum value for description

Methods in org.cdlib.mrt.utility that return TException

Modifier and Type	Method	Description
protected TException	MessageDigestValue.makeTException(String header, Exception ex)

Methods in org.cdlib.mrt.utility that throw TException

Modifier and Type	Method	Description
protected void	ArchiveBuilder.addFiles(File sourceLocation)	Recursive method for finding files and adding to archive
protected void	ArchiveBuilderBase.addFiles(File sourceLocation)	Recursive method for finding files and adding to archive
protected abstract void	ArchiveBuilder.addItemFile(File entry, LoggerInf logger)	Call back routinte to write an archive entry to archive output.
protected void	ArchiveBuilder.Tar.addItemFile(File entry, LoggerInf logger)	write a archive entry to archive output
protected void	ArchiveBuilder.Zip.addItemFile(File entry, LoggerInf logger)	write a archive entry to archive output
protected abstract void	ArchiveBuilderBase.addItemFile(File entry, LoggerInf logger)	Call back routinte to write an archive entry to archive output.
protected void	ArchiveBuilderBase.Tar.addItemFile(File entry, LoggerInf logger)	write a archive entry to archive output
protected void	ArchiveBuilderBase.Zip.addItemFile(File entry, LoggerInf logger)	write a archive entry to archive output
void	MProperties.addProperties(String resource)
protected static void	FileUtil.addTestFile(File tempDir, String fileName)	Add file at this directory level - ending with .txt Note that file content is name of file.
static boolean	StringUtil.argIsTrue(String test)	Test if passed value is a "true" value Used to validate that an argument means "true" or "yes"
void	HttpGet.build()
protected void	ArchiveBuilder.buildArchive()	Create archive from constructor supplied values
void	ArchiveBuilderBase.buildArchive(boolean includeBase)	Create archive from constructor supplied values
void	HttpGet.buildContentLength(org.apache.http.HttpEntity entity)	This routine will perform multiple calls to fix broken connection when content-length exists
protected void	HttpGet.buildNoContentLength(org.apache.http.HttpEntity entity)	This routine is called only when Content-Length not provided on GET response
static File	PairtreeUtil.buildPairDirectory(File baseDirectory, String name)	Build if necessary directories down to object level
static Properties[]	SQLUtil.cmd(String sqlQuery, Connection connection, LoggerInf logger)	Return a row from a table
static File	FileUtil.copy2Temp(File sourceFile)	Return a temp copy of a passed file
static void	FileUtil.copyDirectory(File sourceLocation, File targetLocation)	Copy all files in a directory to another directory (will overwrite)
static void	FileUtil.copyFile(String fileName, File sourceDirectory, File targetDirectory)	Copy file from one directory to another
static void	FileUtil.copyReg(String fileExp, File sourceDirectory, File targetDirectory)	Copy files in one directory to another directory based on matchin a regular expression.
static String	JSONUtil.decode(String text)	Replace quote and escape in JSON string
static String	XMLUtil.decode(String xmlString)	Replace Entity references with XML special characters
static Properties	ZooCodeUtil.decodeItem(byte[] bytes)
static Object	ZooCodeUtil.decodeItem(InputStream inStream)
static void	FileTrans.deleteEmpty(File testFile, File stopDir)	Remove empty directories
static org.apache.http.HttpResponse	HTTPUtil.deleteHttpResponse(String requestURL, int timeout)	Perform a DELETE operation
static InputStream	HTTPUtil.deleteObject(String requestURL, int timeout)	Delete
static InputStream	HTTPUtil.deleteObject(String requestURL, int timeout, int retry)	getObject with timeout and retry
protected static boolean	PairtreeUtil.deletePairPath(File baseDirectory, Vector<String> lvls)	Delete a constructed pair path if path is empty
static Serializable	SerializeUtil.deserialize(File inFile)	Take file and build object from it
static Serializable	SerializeUtil.deserialize(InputStream inStream)	Build serializable object from input stream
static Document	DOMParser.doParse(InputStream istream, LoggerInf logger)	parse xml contained from input stream InputStream Contains logger param Logger Logger to receive messages, if any
static Document	DOMParser.doParse(InputStream istream, LoggerInf logger, boolean validate, boolean nsAware, boolean expandEntities)	parse xml contained from input stream InputStream Contains logger
static String	JSONUtil.encode(String text)	Replace XML special characters with Entity references
static void	ZooCodeUtil.encodeItem(Object object, OutputStream outStream)
static byte[]	ZooCodeUtil.encodeItem(Properties row)
static String	XMLUtil.encodeName(String xmlString)	Replace XML special characters with Entity references
static String	XMLUtil.encodeValue(String xmlString)	Replace XML special characters with Entity references
void	ListProcessorSimple.end()	Process on EnrichmentList item
static long	FileUtil.extractFileCnt(File extFile, long dflt)
protected TLockFile.LockContent	TLockFile.extractLockContent(File localExtractFile)	Lock info extracted from file
static void	FileUtil.file2file(File sourceFile, File targetFile)	Copy one file to another
static String	FileUtil.file2String(File extractFile)	Extract the value of file to a string (utf-8)
static String	FileUtil.file2String(File extractFile, String encType)	Extract the value of file to a string (utf-8)
static String	ListProcessorThreads.file2String(File extractFile, String encoding)	Extract the value of file to a string (utf-8)
static void	Checksums.finishDigest(Checksums.Digest inDigest)
static String	GetProp.get(Properties prop, String key)
static ArchiveBuilder	ArchiveBuilder.getArchiveBuilder(File fromDir, File toArchive, LoggerInf logger, ArchiveBuilder.ArchiveType archiveType)	Factory routine to get specific ArchiveBuilder for supplied ArchiveType
static ArchiveBuilder	ArchiveBuilder.getArchiveBuilder(File fromDir, OutputStream outputStream, LoggerInf logger, ArchiveBuilder.ArchiveType archiveType)	Factory routine to get specific ArchiveBuilder for supplied ArchiveType
static ArchiveBuilderBase	ArchiveBuilderBase.getArchiveBuilderBase(File fromDir, File toArchive, LoggerInf logger, ArchiveBuilderBase.ArchiveType archiveType)	Factory routine to get specific ArchiveBuilder for supplied ArchiveType
static ArchiveBuilderBase	ArchiveBuilderBase.getArchiveBuilderBase(File fromDir, OutputStream outputStream, LoggerInf logger, ArchiveBuilderBase.ArchiveType archiveType)	Factory routine to get specific ArchiveBuilder for supplied ArchiveType
static Boolean	GetProp.getBool(Properties prop, String key)
String	Checksums.getChecksum(String checksumType)
static Checksums	Checksums.getChecksums(String[] types, File inFile)
static Checksums	Checksums.getChecksums(String[] types, InputStream inStream)
static void	FileUtil.getDirectoryFiles(File sourceLocation, Vector<File> files)	Build list of files for a directory
protected String	ArchiveBuilder.getEntryName(File addFile)	Normalize archive entry name
protected String	ArchiveBuilderBase.getEntryName(File addFile)	Normalize archive entry name
static String	GetProp.getEx(Properties prop, String key)
static int	GetProp.getExNumInt(Properties prop, String key)
static void	HttpGet.getFile(URL contentURL, File outFile, int timeout, LoggerInf logger)
static void	HttpGet.getFile(URL contentURL, File outFile, long testLength, int timeout, LoggerInf logger)
static Element	DOMParser.getFirstNode(Element elem, String name)	Stub method: Return first decendant element matching a specific string name (xpath=name[1]
static Element	DOMParser.getFirstNode(Element elem, String name, LoggerInf logger)	Return first decendant element matching a specific string name (xpath=name[1] Contains logger
static InputStream	HTTPUtil.getFTPInputStream(String ftpURLS, int timeout)
static HttpGet	HttpGet.getHttpGet(URL contentURL, File outFile, long testSize, int timeout, LoggerInf logger)
static org.apache.http.HttpResponse	HTTPUtil.getHttpResponse(String requestURL, int timeout)	Perform a GET operation
static org.apache.http.HttpResponse	HTTPUtil.getHttpResponse(String requestURL, int timeout, long startByte, long endByte)	Perform a GET operation
static org.apache.http.HttpResponse	HTTPUtil.getHttpResponse(URL hrefURL, int timeout, int retry)
static String[]	FileUtil.getLinesFromFile(File splitFile)	Return array of nonempty lines from a file
static String[]	FileUtil.getLinesFromURL(LoggerInf logger, String urlS)	Return array of nonempty lines from url content
protected File	TLockFile.getLockFile(File base, String lockName)	get requested lock file
static MrtConnectionPool	MrtConnectionPool.getMrtConnectionPool(String url, String user, String password)
static NodeList	DOMParser.getNodeList(Node node, String expression, LoggerInf logger)	Same as above, fewer parameters Logging routine not added since the original code for this method did no have a "throw" in the catch (TransformerException te) which indicates that it may not be worth logging.
static Long	GetProp.getNumLong(Properties prop, String key)
static long	GetProp.getNumLongEx(Properties prop, String key)
static InputStream	HTTPUtil.getObject(String requestURL, int timeout)	Send this manifestFile to mrt store
static InputStream	HTTPUtil.getObject(String requestURL, int timeout, int retry)	getObject with timeout and retry
static InputStream	HTTPUtil.getObject404(String requestURL, int timeout, int retry)	getObject with timeout and retry
static org.apache.http.HttpEntity	HTTPUtil.getObjectEntity(String requestURL, int timeout)	Send this manifestFile to mrt store
static org.apache.http.HttpEntity	HTTPUtil.getObjectEntity(String requestURL, int timeout, long startByte, long endByte)	Send this manifestFile to mrt store
static Properties	HTTPUtil.getObjectProperties(String requestURL, int timeout, int retry)	Get structured properties from a Get request
static org.apache.http.HttpResponse	HTTPUtil.getObjectResponse(String requestURL, int timeout, int retry)	Get structured properties from a Get request
static File	PairtreeUtil.getPairDirectory(File baseDirectory, String name)	Return a file that may not be resolved for pair path
protected static Vector<String>	PairtreeUtil.getPairLevels(String name)	Get a List of String pairtree elements
static String	PairtreeUtil.getPairName(String name)	Get a pairtree path based on input name
static TLockFile	TLockFile.getReplaceStaleTLockFile(File base, String lockName, int staleTimeSeconds)	Factory method - will replace lock if exceeds stale age
static TLockFile	TLockFile.getReplaceTLockFile(File base, String lockName, int staleTimeSeconds, int replaceTimeSeconds, int matchAttempts, int waitTimeSeconds)	Factory method - will replace lock if exceeds certain age if does not exceed age then it attempts to build lock
InputStream	TFrame.getResource(String resourceName)	Gets a resource using the class loader
static Properties[]	SQLUtil.getResult(ResultSet resultSet, LoggerInf logger)	Return a row from a table
static Serializable	SerializeUtil.getSerializeObject(String requestURL)	build Serializable object from a remote service using a request URL
static String	DOMParser.getSimpleElementText(Node node, LoggerInf logger)	Return concatinated string text values for all text nodes that are children of this node Contains logger
Object	TFrame.getSingleInstance(String registryKey)	Gets the single instance of a 'singleton' patterned class.
Vector	TFrame.getSingleInstances(String registryKey)	Gets the single instance of each class associated with a registry key.
static InputStream	HttpGet.getStream(URL contentURL, int timeout, LoggerInf logger)
static InputStream	HttpGet.getStream(URL contentURL, long testLength, int timeout, LoggerInf logger)
static File	FileUtil.getTempDir(String directoryPrefix)	Get a temporary directory
static File	FileUtil.getTempDir(String directoryPrefix, LoggerInf logger)	Get a temporary directory
static File	FileUtil.getTempFile(String prefix, String suffix)	Create a temp file using prefix and suffix (THREAD SAFE)
static TFileLogger	LoggerAbs.getTFileLogger(String mFrameID, int messageMaxValue, int errorMaxValue)	Factory class for sysout default using explicit numeric levels
static TFileLogger	LoggerAbs.getTFileLogger(String mFrameID, String filePath, Properties prop)	Factory class for file output defined by prop values
static TFileLogger	LoggerAbs.getTFileLogger(String mFrameID, LoggerInf.LogLevel messageLogLevel, LoggerInf.LogLevel errorLogLevel)	Factory class for sysout default using explicit verbose levels
static InputStream	HTTPUtil.getTimeoutInputStream(URL sourceURL, int timeout)	Make a connection using URL and perform timeout test using threads
static TLockFile	TLockFile.getTLockFile(File base, String lockName)	Factory method
static TLockFile	TLockFile.getTLockFile(File base, String lockName, int staleTimeSeconds)	Factory method
static TLockFile	TLockFile.getTLockFile(File base, String lockName, int matchAttempts, int waitTimeSeconds)	Factory method - this form allows multiple retry attempts on the lock
protected ZipEntry	ArchiveBuilderBase.Zip.getZipEntry(File inFile)
static void	FileUtil.incFile(File incFile, int inc)	Increment a stored file value and save back to file
protected void	ListProcessorSimple.initialize(TFrame framework)
void	TFileLogger.initialize(String mFrameID, String filePath, Properties prop)	Initialize the logger inside of a framework.
Object	TFrame.instantiate(String registryKey)	Creates an instance of a registered class.
Vector	TFrame.instantiateAll(String registryKey)	Creates instances of all registered classes sharing a common registry key
protected void	TFrameInit.instantiateTFrame(String[] propertyFiles, String serviceName)	Instantiat TFrame object
void	MProperties.load(InputStream input)
static Properties	PropertiesUtil.loadFileProperties(File loadFile)	Loads properties from a properties files.
protected LoggerInf	TFrame.loadLogger(String logPath)	Loads the registered logger.
void	MProperties.loadProperties(LoggerInf logger, String[] propertiesFileNames)	Loads properties from one or more properties files.
static Properties	PropertiesUtil.loadProperties(String propertiesFileName)	Loads properties from one or more properties files.
static Properties	PropertiesUtil.loadPropertiesFileName(String propertiesFileName)	Loads properties from one or more properties files.
protected void	TFrame.loadServiceProperties(String servicePathName)	Load properties from an optional supplied path.
void	TallyTable.loadTable(File loadFile)	Load tally count from file
static void	FileTrans.main(String[] args)
static void	FileUtil.populateTest(File tempDir, String name, int lvl, int maxlvl)	Create a test directory of form: A AA AB AC ...
static org.apache.http.HttpResponse	HTTPUtil.postHttpResponse(String requestURL, Properties prop, int timeout)	Send this manifestFile to mrt store
static org.apache.http.HttpResponse	HTTPUtil.postMultipartHeader(String requestURL, Properties mainHeaders, Properties stringParts, Map<String,File> fileParts, int timeout)	Do multipart post
static org.apache.http.HttpResponse	HTTPUtil.postMultipartHttpResponse(String requestURL, Properties stringParts, Map<String,File> fileParts, int timeout)	Do multipart post
static org.apache.http.HttpResponse	HTTPUtil.postMultipartHttpResponse2(String requestURL, Properties stringParts, Map<String,File> fileParts, int timeout)	Do multipart post
static InputStream	HTTPUtil.postMultipartObject(String requestURL, Properties stringParts, Map<String,File> fileParts, int timeout)	Return InputStream from multipart request
static InputStream	HTTPUtil.postMultipartObject2(String requestURL, Properties stringParts, Map<String,File> fileParts, int timeout)	Return InputStream from multipart request
static InputStream	HTTPUtil.postObject(String requestURL, Properties prop, int timeout)	Send this manifestFile to mrt store
void	Checksums.process(File testFile)
void	Checksums.process(InputStream inputStream)
void	ListProcessor.process(String item, Properties processProp)	Process on EnrichmentList item
void	ListProcessorSimple.process(String item, Properties processProp)	Process on EnrichmentList item
void	ListProcessorThreads.process(String item, Properties processProp)	Process on EnrichmentList item
void	TimerUtil.process()
void	ListProcessorSimple.processList()	Find list to process and sequentially process the list Note properties: start - beginning offset of list to process last - last offset of list to process
protected void	ListProcessorThreads.processList()	Find list to process and sequentially process the list Note properties: start - beginning offset of list to process last - last offset of list to process
static void	PropertiesUtil.prop2File(Properties prop, String header, File outFile)
static org.apache.http.HttpResponse	HTTPUtil.putMultipartHttpResponse(String requestURL, Properties stringParts, Map<String,File> fileParts, int timeout)	Do multipart post
static InputStream	HTTPUtil.putMultipartObject(String requestURL, Properties stringParts, Map<String,File> fileParts, int timeout)	Return InputStream from multipart request
protected String	ListProcessorThreads.read()	Find list to process and sequentially process the list Note properties: start - beginning offset of list to process last - last offset of list to process
boolean	TLockFile.remove()	delete lock
static boolean	PairtreeUtil.removePairDirectory(File deleteDirectory)	Remove pair directory and remove a parent directory to baseDirectory, but not including base directory
static String	XMLUtil.removeXMLHeader(String xml)
void	TLockFile.replaceLock(int seconds)	replace existing lock with this lock if existing lock exceeds the number of seconds provided.
void	TLockFile.replaceStaleLock()	replace existing lock with this lock if existing lock stale time exceeds current time
protected void	ListProcessorBase.requiredProp(Properties inProp, Properties outProp, String key)	copy property from one Properties to another and throw exception if not found
static Properties	HTTPUtil.response2Property(org.apache.http.HttpResponse response)
void	TLockFile.retryLock(int noMatchAttempts, int matchAttempts, int waitTimeSeconds)	Retry setting lock - Issue several threads waiting on same lock.
void	TallyTable.saveTable(File loadFile)
static void	SerializeUtil.serialize(Serializable serialObject, File outFile)	Write serialized object to file
static void	SerializeUtil.serialize(Serializable serialObject, OutputStream outStream)	Take serializable object and output to stream
protected void	ArchiveBuilder.setEntry(OutputStream out, File entry)	Move file to archive
protected void	ArchiveBuilderBase.setEntry(OutputStream out, File entry)	Move file to archive
protected void	TLockFile.setLock()	set the lock - attempt to write lock file - reread lock - if my lock then lock is active - otherwise lock is inactive
protected abstract void	ArchiveBuilder.setOutputStream(OutputStream baseOutputStream)	Call back routine for setting archive output stream type: tar, tar.gz, zip
protected void	ArchiveBuilder.Tar.setOutputStream(OutputStream baseOutputStream)
protected void	ArchiveBuilder.TarGZ.setOutputStream(OutputStream baseOutputStream)
protected void	ArchiveBuilder.Zip.setOutputStream(OutputStream baseOutputStream)
protected abstract void	ArchiveBuilderBase.setOutputStream(OutputStream baseOutputStream)	Call back routine for setting archive output stream type: tar, tar.gz, zip
protected void	ArchiveBuilderBase.Tar.setOutputStream(OutputStream baseOutputStream)
protected void	ArchiveBuilderBase.TarGZ.setOutputStream(OutputStream baseOutputStream)
protected void	ArchiveBuilderBase.Zip.setOutputStream(OutputStream baseOutputStream)
protected void	MessageDigestValue.setSizeChecksum(InputStream inputStream, String checksumType)	Get size and checksum for newer checksum types
protected void	MessageDigestValue.setSizeChecksum32(Checksum checksum32, InputStream inputStream)	Create checksums for older types: CRC32 and Adler32
static DeleteOnCloseFileInputStream	HttpGet.setTempGet(URL contentURL, long testLength, int timeout, LoggerInf logger)
static DocumentBuilder	DOMParser.setup(LoggerInf logger, boolean validate, boolean nsAware, boolean expandEntities)	get parser Contains logger
static void	FileUtil.stream2File(InputStream inStream, File outFile)	Create a file from a stream
static void	HttpGet.stream2File(InputStream inStream, File outFile, boolean append)	Create a file from a stream
static void	FileUtil.stream2Stream(InputStream inStream, OutputStream outStream)	Copy input stream to output stream
static void	FileUtil.string2File(File createFile, String fileContent)	Create a file containing this string value (utf-8)
static String	ZooCodeUtil.testBase(String base)
protected LoggerInf	FixityTests.testLog(LoggerInf logger)	Throw exception if log is null
void	FileTrans.translate()
static void	FileUtil.updateDirectory(File sourceLocation, File targetLocation)	Copy all files in a directory to another directory (will not overwrite)
static void	FileUtil.url2File(LoggerInf m_logger, String urlS, File outFile)	Get content referenced by a url and save in a file
static void	FileUtil.url2File(LoggerInf m_logger, String urlS, File outFile, int retry)	Get content referenced by a url and save in a file
static void	FileUtil.url2File(LoggerInf m_logger, URL fileURL, File outFile)	Get content referenced by a url and save in a file
static void	FileUtil.url2File(LoggerInf m_logger, URL fileURL, File outFile, int retry)	Get content referenced by a url and save in a file
static void	FileUtil.url2OutputStream(String urlS, OutputStream outStream, int retry)	Move url response to output stream
InputStream	HttpGet.url2Stream(String urlS, long startByte, long endByte)
static File	FileUtil.url2TempFile(LoggerInf m_logger, String urlS)	get remote file
FixityTests.FixityResult	FixityTests.validateSizeChecksum(String passedChecksum, String passedChecksumTypeS, long passedFileSize)	Get the download size and checksum for this file
static String	XSLTUtil.xslConvert(InputStream xmlIS, InputStream xslIS, Hashtable parmTable, LoggerInf logger)	Convert xml using an xslt stylesheet
static String	XSLTUtil.xslConvert(InputStream xmlIS, String idXSL, Hashtable parmTable, LoggerInf logger)	Convert xml using an xslt stylesheet
static String	XSLTUtil.xslConvert(String xml, String idXSL, Hashtable parmTable, LoggerInf logger)
static String	XSLTUtil.xslConvert(StreamSource sourceXML, StreamSource sourceXSL, Hashtable parmTable, LoggerInf logger)	Convert xml using an xslt stylesheet

Constructors in org.cdlib.mrt.utility that throw TException

Modifier	Constructor	Description
	ArchiveBuilder(File fromDir, File toArchive, LoggerInf logger, ArchiveBuilder.ArchiveType archiveType)	Contructor used as build method for this class
	ArchiveBuilder(File fromDir, OutputStream outputStream, LoggerInf logger, ArchiveBuilder.ArchiveType archiveType)	Contructor used as build method for this class
	ArchiveBuilderBase(File fromDir, File toArchive, LoggerInf logger, ArchiveBuilderBase.ArchiveType archiveType)	Contructor used as build method for this class
	ArchiveBuilderBase(File fromDir, OutputStream outputStream, LoggerInf logger, ArchiveBuilderBase.ArchiveType archiveType)	Contructor used as build method for this class
	Checksums(String[] types)
	Digest(String inChecksumType)
	FileTrans(File sourceFile)	File name normalization using default translation Map
	FileTrans(File sourceFile, Map<Character,Character> tranTable)	File name normalization using provided translation Map
	FixityTests(File file, String checksumType, LoggerInf inLogger)	Constructur - primary form Performs checksum creation on file and extacts file size
	FixityTests(InputStream ioStream, String checksumType, LoggerInf inLogger)	Constructer - primary form Performs checksum creation on file and extacts file size
	HttpGet(URL contentURL, File outFile, long testSize, int timeout, LoggerInf logger)
	ListProcessorSimple(TFrame framework)
protected	LockContent(String lockContent)	Lock info extracted from string
	MessageDigestValue(File file, String checksumTypeS, LoggerInf inLogger)	Constructur - primary form Performs checksum creation on file and extacts file size
	MessageDigestValue(InputStream inputStream, String checksumTypeS, LoggerInf inLogger)	Constructer - primary form Performs checksum creation on file and extacts file size
	Tar(File fromDir, File toArchive, LoggerInf logger)
	Tar(File fromDir, File toArchive, LoggerInf logger, ArchiveBuilder.ArchiveType archiveType)
	Tar(File fromDir, OutputStream outputStream, LoggerInf logger)
	Tar(File fromDir, OutputStream outputStream, LoggerInf logger, ArchiveBuilder.ArchiveType archiveType)
	Tar(File fromDir, File toArchive, LoggerInf logger)
	Tar(File fromDir, File toArchive, LoggerInf logger, ArchiveBuilderBase.ArchiveType archiveType)
	Tar(File fromDir, OutputStream outputStream, LoggerInf logger)
	Tar(File fromDir, OutputStream outputStream, LoggerInf logger, ArchiveBuilderBase.ArchiveType archiveType)
	TarGZ(File fromDir, File toArchive, LoggerInf logger)
	TarGZ(File fromDir, OutputStream outputStream, LoggerInf logger)
	TarGZ(File fromDir, File toArchive, LoggerInf logger)
	TarGZ(File fromDir, OutputStream outputStream, LoggerInf logger)
	TFileLogger(String mFrameID, String filePath, Properties prop)
	TFrame(String[] propertiesFileNames)	Constructs a framework, loading properties from one or more property files.
	TFrame(String[] propertiesFileNames, String frameworkID)	Constructs a framework, loading properties from one or more property files.
	TFrame(String[] propertiesFileNames, String frameworkID, String servicePathName)	Constructs a framework, loading properties from one or more property files.
	TFrameInit(javax.servlet.ServletConfig servletConfig, String serviceName)	Check InitParameters from web.xml to discover Properties files then build TFrame properties resolver
	TimerUtil(File inLogFile)
	TLockFile(File base, String lockName)	Constructor
	TLockFile(File base, String lockName, Integer staleTimeSeconds)
	Zip(File fromDir, File toArchive, LoggerInf logger)
	Zip(File fromDir, File toArchive, LoggerInf logger, ArchiveBuilder.ArchiveType archiveType)
	Zip(File fromDir, OutputStream outputStream, LoggerInf logger)
	Zip(File fromDir, File toArchive, LoggerInf logger)
	Zip(File fromDir, File toArchive, LoggerInf logger, ArchiveBuilderBase.ArchiveType archiveType)
	Zip(File fromDir, OutputStream outputStream, LoggerInf logger)