Index (UC3-mrtcore 3.1-SNAPSHOT API)

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form

A

accumCounter - Variable in class org.cdlib.mrt.utility.TimerUtil
accumTimer - Variable in class org.cdlib.mrt.utility.TimerUtil
activeLock - Variable in class org.cdlib.mrt.utility.TLockFile
activeThreads() - Method in class org.cdlib.mrt.utility.ListProcessorThreads: return a count of active threads Also, remove inactive threads from m_threadList container
actualCnt - Variable in class org.cdlib.mrt.cloud.VersionMap
actualSize - Variable in class org.cdlib.mrt.cloud.VersionMap
add - Enum constant in enum org.cdlib.mrt.core.ManifestRowAbs.ManifestType
add(String, String, long, String, String, String) - Method in class org.cdlib.mrt.cloud.CloudList
add(String, String, long, String, String, String, MessageDigest, String) - Method in class org.cdlib.mrt.cloud.CloudList
add(CloudList.CloudEntry) - Method in class org.cdlib.mrt.cloud.CloudList
add(ManInfo) - Method in class org.cdlib.mrt.cloud.VersionMap
add(DirectoryStats) - Method in class org.cdlib.mrt.utility.DirectoryStats: Add directory tallies from other DirectoryStats to this stats
addAccum(String, long) - Method in class org.cdlib.mrt.utility.TimerUtil
addComponent(FileComponent) - Method in class org.cdlib.mrt.cloud.ManifestStr
addComponentFile(int, File, FileComponent) - Method in class org.cdlib.mrt.cloud.VersionData
addComponentsList(int, File) - Method in class org.cdlib.mrt.cloud.VersionData
addDiffTime(String, long) - Method in class org.cdlib.mrt.utility.TallyTable: Add difference in time from arg to now
addDirectoryLevels(File, Vector<String>) - Static method in class org.cdlib.mrt.utility.PairtreeUtil: Build if necessary directories down to object level
addEle(String, String) - Method in class org.cdlib.mrt.cloud.ManifestStr
addEle(String, LinkedHashMap<String, String>) - Method in class org.cdlib.mrt.cloud.ManifestStr
addEntry(String, JSONObject) - Static method in class org.cdlib.mrt.log.utility.AddStateEntryGen: Add one or more JSON entries in log4j2
addFile(File, String, LoggerInf) - Method in class org.cdlib.mrt.core.FileContent: Build FileState information from file
addFileComponent(String, FileComponent) - Method in class org.cdlib.mrt.core.ComponentContent
addFiles(File) - Method in class org.cdlib.mrt.utility.ArchiveBuilder: Recursive method for finding files and adding to archive
addFiles(File) - Method in class org.cdlib.mrt.utility.ArchiveBuilderBase: Recursive method for finding files and adding to archive
addHash(ManInfo) - Method in class org.cdlib.mrt.cloud.VersionMap
addHeader() - Method in class org.cdlib.mrt.cloud.ManifestStr
addItemFile(File, LoggerInf) - Method in class org.cdlib.mrt.utility.ArchiveBuilder: Call back routinte to write an archive entry to archive output.
addItemFile(File, LoggerInf) - Method in class org.cdlib.mrt.utility.ArchiveBuilder.Tar: write a archive entry to archive output
addItemFile(File, LoggerInf) - Method in class org.cdlib.mrt.utility.ArchiveBuilder.Zip: write a archive entry to archive output
addItemFile(File, LoggerInf) - Method in class org.cdlib.mrt.utility.ArchiveBuilderBase: Call back routinte to write an archive entry to archive output.
addItemFile(File, LoggerInf) - Method in class org.cdlib.mrt.utility.ArchiveBuilderBase.Tar: write a archive entry to archive output
addItemFile(File, LoggerInf) - Method in class org.cdlib.mrt.utility.ArchiveBuilderBase.Zip: write a archive entry to archive output
addLine(String) - Method in class org.cdlib.mrt.formatter.NSMap
addLine(String) - Method in class org.cdlib.mrt.utility.TimerUtil
addLog(String, String) - Method in class org.cdlib.mrt.log.utility.AddStateEntry
addLog(String, String) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
addLogJson(Level, String, JSONObject) - Static method in class org.cdlib.mrt.log.utility.AddStateEntryGen
addLogKey(String, JSONObject) - Static method in class org.cdlib.mrt.log.utility.AddStateEntry
addLogKey(String, JSONObject) - Static method in class org.cdlib.mrt.log.utility.AddStateEntryGen
addLogLevel(Level, String) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
addLogStateEntry(String) - Method in class org.cdlib.mrt.log.utility.AddStateEntry
addLogStateEntry(String) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
addLogStateEntry(String, String) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
addLogStateEntry(String, String, JSONObject) - Static method in class org.cdlib.mrt.log.utility.AddStateEntryGen
addLogStateEntry(String, JSONObject) - Static method in class org.cdlib.mrt.log.utility.AddStateEntry
addLogStateEntry(String, JSONObject) - Static method in class org.cdlib.mrt.log.utility.AddStateEntryGen
addLogStateEntry(Level, String, JSONObject) - Static method in class org.cdlib.mrt.log.utility.AddStateEntry
addlvl() - Method in class org.cdlib.mrt.cloud.ManifestStr
addLvl(int, PrintStream) - Method in class org.cdlib.mrt.formatter.FormatterAbs: Indent handling for output display stream
addManifestRow(File, String, String, File) - Method in class org.cdlib.mrt.tools.loader.LoaderManifest: Build a POST manifest
addMessageDigest(String, String) - Method in class org.cdlib.mrt.core.FileComponent: Save a new MessageDigest for this file
addMockSsmValue(String, String) - Method in class org.cdlib.mrt.tools.MockConfigResolver
addNameValue(List<NameValuePair>, String, String) - Method in class org.cdlib.mrt.core.StorageAddClient
addNewProperty(String, String) - Method in class org.cdlib.mrt.utility.TFrame: Saves a framework property if property does not exist
addObject() - Method in class org.cdlib.mrt.cloud.ManifestStr
addProp(Properties, String, String) - Method in class org.cdlib.mrt.utility.FixityTests: Add property if non-null
addProperties(String) - Method in class org.cdlib.mrt.utility.MProperties
addProperties(Properties) - Method in class org.cdlib.mrt.utility.MProperties
addRequestToProperties(ServletRequest) - Static method in class org.cdlib.mrt.utility.PropertiesUtil
addSimple(String, String) - Method in class org.cdlib.mrt.cloud.ManifestStr
AddStateEntry - Class in org.cdlib.mrt.log.utility
AddStateEntry(String, String) - Constructor for class org.cdlib.mrt.log.utility.AddStateEntry
AddStateEntryGen - Class in org.cdlib.mrt.log.utility
AddStateEntryGen(String, String, String) - Constructor for class org.cdlib.mrt.log.utility.AddStateEntryGen
addTail() - Method in class org.cdlib.mrt.cloud.ManifestStr
addTest(int, int) - Method in class org.cdlib.mrt.cloud.VersionMap
addTestFile(File, String) - Static method in class org.cdlib.mrt.test.TestFileUtil: Add file at this directory level - ending with .txt Note that file content is name of file.
addTestFile(File, String) - Static method in class org.cdlib.mrt.utility.FileUtil: Add file at this directory level - ending with .txt Note that file content is name of file.
addVersion(int, Identifier, String, String, File, Long, MessageDigest) - Method in class org.cdlib.mrt.tools.loader.StoreLoader
addVersion(String, int, Identifier, String, String, String, String, Long, String, String, String, int, int) - Method in class org.cdlib.mrt.core.StorageAddClient
addVersion(String, String, String, String, String, String, String, String, String) - Method in class org.cdlib.mrt.core.StorageAddClient
addVersion(List<FileComponent>) - Method in class org.cdlib.mrt.cloud.VersionMap
addVersions() - Method in class org.cdlib.mrt.cloud.ManifestStr
adler32 - Enum constant in enum org.cdlib.mrt.utility.MessageDigestType
algorithm - Variable in class org.cdlib.mrt.core.MessageDigest
algorithm - Variable in class org.cdlib.mrt.utility.Checksums.Digest
alternates - Variable in class org.cdlib.mrt.core.Tika
anvl - Enum constant in enum org.cdlib.mrt.formatter.FormatInfo
anvl - Enum constant in enum org.cdlib.mrt.formatter.FormatterInf.Format
anvl - Enum constant in enum org.cdlib.mrt.formatter.FormatType
ANVLFormatter - Class in org.cdlib.mrt.formatter: ANVL output display formatter
ANVLFormatter(LoggerInf) - Constructor for class org.cdlib.mrt.formatter.ANVLFormatter
ArchiveBuilder - Class in org.cdlib.mrt.utility: Build an archive (tar, targz, or zip) from a directory
ArchiveBuilder(File, File, LoggerInf, ArchiveBuilder.ArchiveType) - Constructor for class org.cdlib.mrt.utility.ArchiveBuilder: Contructor used as build method for this class
ArchiveBuilder(File, OutputStream, LoggerInf, ArchiveBuilder.ArchiveType) - Constructor for class org.cdlib.mrt.utility.ArchiveBuilder: Contructor used as build method for this class
ArchiveBuilder.ArchiveType - Enum in org.cdlib.mrt.utility: Archive types available Enum constructor: extension, mimeType
ArchiveBuilder.Tar - Class in org.cdlib.mrt.utility: Tar archive - with call backs for Tar
ArchiveBuilder.TarGZ - Class in org.cdlib.mrt.utility: Tar-gunzip archive - with call backs specific to Tar
ArchiveBuilder.Zip - Class in org.cdlib.mrt.utility: Zip archive - with call backs specific to zip
ArchiveBuilderBase - Class in org.cdlib.mrt.utility: Build an archive (tar, targz, or zip) from a directory
ArchiveBuilderBase(File, File, LoggerInf, ArchiveBuilderBase.ArchiveType) - Constructor for class org.cdlib.mrt.utility.ArchiveBuilderBase: Contructor used as build method for this class
ArchiveBuilderBase(File, OutputStream, LoggerInf, ArchiveBuilderBase.ArchiveType) - Constructor for class org.cdlib.mrt.utility.ArchiveBuilderBase: Contructor used as build method for this class
ArchiveBuilderBase.ArchiveType - Enum in org.cdlib.mrt.utility: Archive types available Enum constructor: extension, mimeType
ArchiveBuilderBase.Tar - Class in org.cdlib.mrt.utility: Tar archive - with call backs for Tar
ArchiveBuilderBase.TarGZ - Class in org.cdlib.mrt.utility: Tar-gunzip archive - with call backs specific to Tar
ArchiveBuilderBase.Zip - Class in org.cdlib.mrt.utility: Zip archive - with call backs specific to zip
archiveType - Variable in class org.cdlib.mrt.utility.ArchiveBuilder
archiveType - Variable in class org.cdlib.mrt.utility.ArchiveBuilderBase
argIsTrue(String) - Static method in class org.cdlib.mrt.utility.StringUtil: Test if passed value is a "true" value Used to validate that an argument means "true" or "yes"
ARK - Enum constant in enum org.cdlib.mrt.core.Identifier.Namespace
attemptReconnection() - Method in class org.cdlib.mrt.db.DPRFileDB
attributes2LinkedHash(Attributes) - Static method in class org.cdlib.mrt.security.LDAPUtil
attributes2LinkedHash(LinkedHashList<String, String>, Attributes) - Static method in class org.cdlib.mrt.security.LDAPUtil

B

b4 - Variable in class org.cdlib.mrt.security.Base64.OutputStream
BAD_REQUEST_FORMAT - Enum constant in enum org.cdlib.mrt.utility.LoggerInf.LogLevel
Base64 - Class in org.cdlib.mrt.security: Encodes and decodes to and from Base64 notation.
Base64() - Constructor for class org.cdlib.mrt.security.Base64: Defeats instantiation.
Base64.InputStream - Class in org.cdlib.mrt.security: A Base64.InputStream will read data from another java.io.InputStream, given in the constructor, and encode/decode to/from Base64 notation on the fly.
Base64.OutputStream - Class in org.cdlib.mrt.security: A Base64.OutputStream will write data to another java.io.OutputStream, given in the constructor, and encode/decode to/from Base64 notation on the fly.
batch - Enum constant in enum org.cdlib.mrt.core.ManifestRowAbs.ManifestType
batchComponent - Variable in class org.cdlib.mrt.tools.loader.LoaderManifest
BatchLoader - Class in org.cdlib.mrt.tools.loader: Run a Storage load test
BatchLoader(TFrame) - Constructor for class org.cdlib.mrt.tools.loader.BatchLoader
BatchLoaderTest - Class in org.cdlib.mrt.tools.loader.test
BatchLoaderTest() - Constructor for class org.cdlib.mrt.tools.loader.test.BatchLoaderTest
BatchManifest - Class in org.cdlib.mrt.tools.loader: Process required for constructing batch and object manifest data for emulating mets feeder
BatchManifest(String, Vector<LoaderInfo>, File, URL, URL, LoggerInf) - Constructor for class org.cdlib.mrt.tools.loader.BatchManifest
BatchManifestTest - Class in org.cdlib.mrt.tools.loader.test
BatchManifestTest() - Constructor for class org.cdlib.mrt.tools.loader.test.BatchManifestTest
BATCHNAME - Variable in class org.cdlib.mrt.tools.loader.BatchManifest
boxToken - Static variable in class org.cdlib.mrt.core.FileComponent
br - Variable in class org.cdlib.mrt.core.Manifest
breakLines - Variable in class org.cdlib.mrt.security.Base64.InputStream
breakLines - Variable in class org.cdlib.mrt.security.Base64.OutputStream
buffer - Variable in class org.cdlib.mrt.security.Base64.InputStream
buffer - Variable in class org.cdlib.mrt.security.Base64.OutputStream
bufferLength - Variable in class org.cdlib.mrt.security.Base64.InputStream
bufferLength - Variable in class org.cdlib.mrt.security.Base64.OutputStream
BUFSIZE - Static variable in class org.cdlib.mrt.test.TestFileUtil
BUFSIZE - Static variable in class org.cdlib.mrt.utility.ArchiveBuilder
BUFSIZE - Static variable in class org.cdlib.mrt.utility.ArchiveBuilderBase
BUFSIZE - Static variable in class org.cdlib.mrt.utility.Checksums
BUFSIZE - Static variable in class org.cdlib.mrt.utility.FileTrans
BUFSIZE - Static variable in class org.cdlib.mrt.utility.FileUtil
BUFSIZE - Static variable in class org.cdlib.mrt.utility.FixityTests
BUFSIZE - Static variable in class org.cdlib.mrt.utility.HttpGet
BUFSIZE - Static variable in class org.cdlib.mrt.utility.MessageDigestValue
build() - Method in class org.cdlib.mrt.utility.HttpGet
buildAddManifest(String, int, File) - Method in class org.cdlib.mrt.cloud.VersionMap: Create an add Manifest in File addManifest
buildArchive() - Method in class org.cdlib.mrt.utility.ArchiveBuilder: Create archive from constructor supplied values
buildArchive(boolean) - Method in class org.cdlib.mrt.utility.ArchiveBuilderBase: Create archive from constructor supplied values
buildBatchManifest() - Method in class org.cdlib.mrt.tools.loader.BatchManifest
buildBatchManifestRow() - Method in class org.cdlib.mrt.tools.loader.LoaderManifest: Build the METS component to be added to the component list for an individual object manifest
buildComponents(Manifest, InputStream) - Method in class org.cdlib.mrt.core.ComponentContent: From a post manifest InputStream Return a VersionContent object
buildContent() - Method in class org.cdlib.mrt.cloud.VersionData
buildContent() - Method in class org.cdlib.mrt.log.utility.AddStateEntry
buildContent() - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
buildContentLength(HttpEntity) - Method in class org.cdlib.mrt.utility.HttpGet: This routine will perform multiple calls to fix broken connection when content-length exists
buildContentManifests() - Method in class org.cdlib.mrt.tools.loader.BatchManifest
buildFileCnt - Variable in class org.cdlib.mrt.utility.ArchiveBuilderBase
buildID() - Method in class org.cdlib.mrt.log.utility.AddStateEntry
buildID() - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
buildLoaderManifest(int) - Method in class org.cdlib.mrt.tools.loader.BatchManifest
buildLoadProperties(Properties) - Static method in class org.cdlib.mrt.utility.PropertiesUtil: Build string containing display form of Properties contents
buildLockContent(Integer) - Method in class org.cdlib.mrt.utility.TLockFile: Used to create a new LockContent object using a stale date
buildManifest(VersionMap, File) - Static method in class org.cdlib.mrt.cloud.ManifestStr
buildManifest(VersionMap, OutputStream) - Static method in class org.cdlib.mrt.cloud.ManifestStr
buildManifest(ManifestRowAbs.ManifestType) - Method in class org.cdlib.mrt.tools.loader.LoaderManifest
buildManifests() - Method in class org.cdlib.mrt.cloud.VersionData
buildManInfo(int, DateState, List<FileComponent>) - Static method in class org.cdlib.mrt.cloud.VersionMap
buildMap(InputStream, LoggerInf) - Static method in class org.cdlib.mrt.cloud.ManifestSAX
buildMetaProperties() - Method in class org.cdlib.mrt.cloud.CloudProperties
buildModify(Properties) - Static method in class org.cdlib.mrt.db.DBUtil
buildModifyNull(Properties) - Static method in class org.cdlib.mrt.db.DBUtil
buildNoContentLength(HttpEntity) - Method in class org.cdlib.mrt.utility.HttpGet: This routine is called only when Content-Length not provided on GET response
buildPairDirectory(File, String) - Static method in class org.cdlib.mrt.utility.PairtreeUtil: Build if necessary directories down to object level
buildProperties() - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
buildReaderFile() - Method in class org.cdlib.mrt.formatter.NSMap
buildReaderFile() - Method in class org.cdlib.mrt.utility.TimerUtil
buildReaderFile(File) - Method in class org.cdlib.mrt.utility.ListProcessorThreads
buildResourceTable() - Method in class org.cdlib.mrt.formatter.NSMap
buildSelect(Properties) - Static method in class org.cdlib.mrt.db.DBUtil: Build a select query from a set of properties Individual search elements are adjusted based on presents of % for triggering a like relation.
buildService() - Method in class org.cdlib.mrt.log.utility.AddStateEntry
buildService() - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
buildStateJSON() - Method in class org.cdlib.mrt.log.utility.AddStateEntry
buildStateJSON() - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
buildTimeMs - Variable in class org.cdlib.mrt.utility.ArchiveBuilderBase
builtProperties - Variable in class org.cdlib.mrt.utility.MProperties
bump(String) - Method in class org.cdlib.mrt.utility.TallyTable: increment a counter with this name by 1 and save
bump(String, long) - Method in class org.cdlib.mrt.utility.TallyTable: increment a counter with this name and save
bump(TallyTable) - Method in class org.cdlib.mrt.utility.TallyTable: increment counts using another CountQueue
bumpCmd(String, long) - Method in class org.cdlib.mrt.core.PingState
byteArrToString(byte[]) - Static method in class org.cdlib.mrt.utility.StringUtil: Converts an array of bytes to a string guaranteeing utf-8 mapping if possible
Note works only with utf-8 and a byte-char set (e.g.

C

call() - Method in class org.cdlib.mrt.utility.TimerUtil
certFile - Variable in class org.cdlib.mrt.security.CertsLDAP
CertsLDAP - Class in org.cdlib.mrt.security
CertsLDAP(File, String) - Constructor for class org.cdlib.mrt.security.CertsLDAP
characters(char[], int, int) - Method in class org.cdlib.mrt.cloud.ManifestSAX
charToEntity(String) - Static method in class org.cdlib.mrt.utility.XSLTUtil: Converts a standard text string so it can be included as XML text
checkm - Variable in class org.cdlib.mrt.core.ManifestRowCheckmAbs
Checkm - Class in org.cdlib.mrt.core: Dflat POST manifest row support This routine is used in conjunction with Manifest for parsing the manifest process line.
Checkm(LoggerInf, String[]) - Constructor for class org.cdlib.mrt.core.Checkm: Constructor
Checkm.ColMap - Enum in org.cdlib.mrt.core: Map semantic definition to enum
Checkm.Prefix - Enum in org.cdlib.mrt.core: Semantic prefixes used in row definitions
CHECKMHD - Static variable in class org.cdlib.mrt.core.Checkm
checksum - Variable in class org.cdlib.mrt.utility.Checksums.Digest
checksum - Variable in class org.cdlib.mrt.utility.MessageDigestValue
checksum - Variable in class org.cdlib.mrt.utility.MessageDigestValue.Result
checksumMatch - Variable in class org.cdlib.mrt.utility.FixityTests.FixityResult
Checksums - Class in org.cdlib.mrt.utility
Checksums(String[]) - Constructor for class org.cdlib.mrt.utility.Checksums
Checksums.Digest - Class in org.cdlib.mrt.utility
checksumType - Variable in class org.cdlib.mrt.tools.loader.BatchLoader
checksumType - Variable in class org.cdlib.mrt.tools.loader.BatchManifest
checksumType - Variable in class org.cdlib.mrt.tools.loader.LoaderManifest
checksumType - Variable in class org.cdlib.mrt.tools.loader.StoreLoader
checksumType - Variable in class org.cdlib.mrt.utility.Checksums.Digest
checksumType - Variable in class org.cdlib.mrt.utility.MessageDigestValue
checksumType - Variable in class org.cdlib.mrt.utility.MessageDigestValue.Result
className - Variable in class org.cdlib.mrt.formatter.NSMap.NSEntry
clear() - Method in class org.cdlib.mrt.cloud.CloudProperties
clear() - Method in class org.cdlib.mrt.utility.LinkedHashList: Empty list
clear() - Method in class org.cdlib.mrt.utility.RegexPatternCache: Empty cache
clear() - Method in class org.cdlib.mrt.utility.TallyTable
close() - Method in class org.cdlib.mrt.security.Base64.OutputStream: Flushes and closes (I think, in the superclass) the stream.
close() - Method in class org.cdlib.mrt.utility.DeleteOnCloseFileInputStream
close() - Method in interface org.cdlib.mrt.utility.LoggerInf: Closes the log
close() - Method in class org.cdlib.mrt.utility.MrtConnection
close() - Method in class org.cdlib.mrt.utility.TFileLogger: Closes the log
closeArchive() - Method in class org.cdlib.mrt.utility.ArchiveBuilder: Call back routine to close archive.
closeArchive() - Method in class org.cdlib.mrt.utility.ArchiveBuilder.Tar
closeArchive() - Method in class org.cdlib.mrt.utility.ArchiveBuilder.Zip
closeArchive() - Method in class org.cdlib.mrt.utility.ArchiveBuilderBase: Call back routine to close archive.
closeArchive() - Method in class org.cdlib.mrt.utility.ArchiveBuilderBase.Tar
closeArchive() - Method in class org.cdlib.mrt.utility.ArchiveBuilderBase.Zip
closeConnections() - Method in class org.cdlib.mrt.db.DBConnectionPool
closeConnections() - Method in class org.cdlib.mrt.utility.MrtConnectionPool
closeOutput() - Method in class org.cdlib.mrt.core.Manifest: close output stream
closeOutput(PrintStream) - Method in class org.cdlib.mrt.formatter.FormatterAbs: Close output stream
CloseQueue() - Constructor for class org.cdlib.mrt.utility.ListProcessorThreads.CloseQueue
CloudEntry() - Constructor for class org.cdlib.mrt.cloud.CloudList.CloudEntry
CloudEntry(String, String, long, String, String, String) - Constructor for class org.cdlib.mrt.cloud.CloudList.CloudEntry
CloudEntry(String, String, long, String, String, String, MessageDigest, String) - Constructor for class org.cdlib.mrt.cloud.CloudList.CloudEntry
CloudList - Class in org.cdlib.mrt.cloud: Cloud Properties - case insensitive Properties
CloudList() - Constructor for class org.cdlib.mrt.cloud.CloudList
CloudList.CloudEntry - Class in org.cdlib.mrt.cloud
CloudProperties - Class in org.cdlib.mrt.cloud: Cloud Properties - case insensitive Properties
CloudProperties() - Constructor for class org.cdlib.mrt.cloud.CloudProperties
CloudProperties(Properties) - Constructor for class org.cdlib.mrt.cloud.CloudProperties
cmd(String, Connection, LoggerInf) - Static method in class org.cdlib.mrt.utility.SQLUtil: Return a row from a table
cmd(Connection, String, LoggerInf) - Static method in class org.cdlib.mrt.db.DBUtil
cnt - Variable in class org.cdlib.mrt.core.ManifestBuild.PropInfo
cnt - Variable in class org.cdlib.mrt.tools.loader.LoaderManifest
cols - Static variable in class org.cdlib.mrt.core.ManifestRowAdd
cols - Static variable in class org.cdlib.mrt.core.ManifestRowBatch
cols - Static variable in class org.cdlib.mrt.core.ManifestRowIngest
cols - Static variable in class org.cdlib.mrt.core.ManifestRowObject
columnMap - Variable in class org.cdlib.mrt.core.Checkm
COLUMNS - Static variable in class org.cdlib.mrt.core.Checkm
compare() - Method in class org.cdlib.mrt.cloud.MatchMap
complete() - Method in class org.cdlib.mrt.utility.ListProcessorThreads
completed - Enum constant in enum org.cdlib.mrt.core.ProcessStatus
completeThreads() - Method in class org.cdlib.mrt.core.ThreadHandler
component - Variable in class org.cdlib.mrt.cloud.VersionMap.VersionFileComponent
ComponentContent - Class in org.cdlib.mrt.core
ComponentContent(List<FileComponent>) - Constructor for class org.cdlib.mrt.core.ComponentContent
ComponentContent(LoggerInf, Manifest, InputStream) - Constructor for class org.cdlib.mrt.core.ComponentContent
componentFile - Variable in class org.cdlib.mrt.core.FileComponent
components - Variable in class org.cdlib.mrt.cloud.ManifestSAX
components - Variable in class org.cdlib.mrt.cloud.ManInfo
components - Variable in class org.cdlib.mrt.tools.loader.LoaderManifest
componentTable - Variable in class org.cdlib.mrt.core.ComponentContent
componentURLBase - Variable in class org.cdlib.mrt.tools.loader.BatchLoader
componentURLBase - Variable in class org.cdlib.mrt.tools.loader.BatchManifest
componentURLBase - Variable in class org.cdlib.mrt.tools.loader.LoaderManifest
componentURLBase - Variable in class org.cdlib.mrt.tools.loader.StoreLoader
compress(String) - Static method in class org.cdlib.mrt.utility.StringUtil: compress multiple occurances of blank to one occurance
compress(String, String) - Static method in class org.cdlib.mrt.utility.StringUtil: compress multiple occurances of cval to one occurance
compressZip - Variable in class org.cdlib.mrt.utility.ArchiveBuilderBase
CONCURRENT_UPDATE - Enum constant in enum org.cdlib.mrt.utility.TExceptionEnum
CONCURRENT_UPDATE(Exception) - Constructor for exception org.cdlib.mrt.utility.TException.CONCURRENT_UPDATE
CONCURRENT_UPDATE(Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.CONCURRENT_UPDATE
CONCURRENT_UPDATE(String) - Constructor for exception org.cdlib.mrt.utility.TException.CONCURRENT_UPDATE
CONCURRENT_UPDATE(String) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.CONCURRENT_UPDATE
CONCURRENT_UPDATE(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TException.CONCURRENT_UPDATE
CONCURRENT_UPDATE(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.CONCURRENT_UPDATE
CONFIGURATION_INVALID - Enum constant in enum org.cdlib.mrt.utility.TExceptionEnum
conn - Variable in class org.cdlib.mrt.utility.MrtConnection
connectionPool - Variable in class org.cdlib.mrt.db.DBConnectionPool
container - Variable in class org.cdlib.mrt.cloud.CloudList.CloudEntry
contains(String, String, String, String, String) - Static method in class org.cdlib.mrt.security.LDAPUtil
contentLength - Variable in class org.cdlib.mrt.utility.HttpGet
contentType - Variable in class org.cdlib.mrt.cloud.CloudList.CloudEntry
contentURL - Variable in class org.cdlib.mrt.utility.HttpGet
convertNodeToString(Node) - Static method in class org.cdlib.mrt.utility.DOMParser: Convert node to string
copy() - Method in class org.cdlib.mrt.utility.DirectoryStats: copy constructor
copy(FileComponent) - Method in class org.cdlib.mrt.core.FileComponent: copy "Constructor" Copy another FileState to this FileState
copy2Temp(File) - Static method in class org.cdlib.mrt.test.TestFileUtil: Return a temp copy of a passed file
copy2Temp(File) - Static method in class org.cdlib.mrt.utility.FileUtil: Return a temp copy of a passed file
copyContent(String, int, Identifier) - Method in class org.cdlib.mrt.cloud.VersionData
copyDirectory(File, File) - Static method in class org.cdlib.mrt.test.TestFileUtil: Copy all files in a directory to another directory (will overwrite)
copyDirectory(File, File) - Static method in class org.cdlib.mrt.utility.FileUtil: Copy all files in a directory to another directory (will overwrite)
copyFile(String, File, File) - Static method in class org.cdlib.mrt.test.TestFileUtil: Copy file from one directory to another
copyFile(String, File, File) - Static method in class org.cdlib.mrt.utility.FileUtil: Copy file from one directory to another
copyProperties(Properties) - Static method in class org.cdlib.mrt.utility.PropertiesUtil: Copy an existing set of properties to another properties
copyProperty(Properties, String, String) - Static method in class org.cdlib.mrt.utility.PropertiesUtil: Copy single property key-value
copyReg(String, File, File) - Static method in class org.cdlib.mrt.test.TestFileUtil: Copy files in one directory to another directory based on matchin a regular expression.
copyReg(String, File, File) - Static method in class org.cdlib.mrt.utility.FileUtil: Copy files in one directory to another directory based on matchin a regular expression.
copyVersion(StorageAddClient, String, int, Identifier, File) - Method in class org.cdlib.mrt.cloud.VersionData
count - Variable in class org.cdlib.mrt.cloud.ManInfo
count - Variable in class org.cdlib.mrt.utility.TimerUtil.Stat
count(String, String) - Static method in class org.cdlib.mrt.utility.StringUtil: Count the number of times match occurs in source
crc32 - Enum constant in enum org.cdlib.mrt.utility.MessageDigestType
created - Variable in class org.cdlib.mrt.cloud.CloudList.CloudEntry
created - Variable in class org.cdlib.mrt.cloud.ManInfo
created - Variable in class org.cdlib.mrt.core.FileComponent
createHttpClient_AcceptsUntrustedCerts() - Static method in class org.cdlib.mrt.utility.HTTPUtil
createJson(Object) - Method in class org.cdlib.mrt.tools.YamlParser
createJsonArray(Object) - Method in class org.cdlib.mrt.tools.YamlParser
creationDate - Variable in class org.cdlib.mrt.utility.TLockFile.LockContent
creator - Enum constant in enum org.cdlib.mrt.core.Checkm.ColMap
creator - Variable in class org.cdlib.mrt.core.FileComponent
creator - Variable in class org.cdlib.mrt.tools.loader.LoaderInfo
csv - Enum constant in enum org.cdlib.mrt.formatter.FormatType
current - Variable in class org.cdlib.mrt.cloud.VersionData
current - Variable in class org.cdlib.mrt.cloud.VersionMap
currentLock - Variable in class org.cdlib.mrt.utility.TLockFile
currentProp - Variable in class org.cdlib.mrt.cloud.ManifestSAX

D

dataCite2dc(String, LoggerInf) - Static method in class org.cdlib.mrt.core.DataciteConvert: Convert DataCite format to standard dc
dataCite2dc(String, LoggerInf) - Static method in class org.cdlib.mrt.core.DC: Convert DataCite format to standard dc
DataciteConvert - Class in org.cdlib.mrt.core: retrieve data if ns is a manifest
DataciteConvert() - Constructor for class org.cdlib.mrt.core.DataciteConvert
DataciteConvert.StyleEnum - Enum in org.cdlib.mrt.core
dataDir - Variable in class org.cdlib.mrt.cloud.VersionData
dataDir - Variable in class org.cdlib.mrt.tools.loader.LoaderManifest
date - Enum constant in enum org.cdlib.mrt.core.Checkm.ColMap
date - Variable in class org.cdlib.mrt.core.DateState
date - Variable in class org.cdlib.mrt.core.FileComponent
DateState - Class in org.cdlib.mrt.core: Basic Date State information
DateState() - Constructor for class org.cdlib.mrt.core.DateState: Contructor
DateState(long) - Constructor for class org.cdlib.mrt.core.DateState: Constructor
DateState(String) - Constructor for class org.cdlib.mrt.core.DateState: Contructor
DateState(Date) - Constructor for class org.cdlib.mrt.core.DateState: Constructor
DateUtil - Class in org.cdlib.mrt.utility
DateUtil() - Constructor for class org.cdlib.mrt.utility.DateUtil
DBConnectionPool - Class in org.cdlib.mrt.db: Database Connection Pool explicitly set up to run with BoneCP
DBConnectionPool(String, String, String) - Constructor for class org.cdlib.mrt.db.DBConnectionPool
DBDATEPATTERN - Static variable in class org.cdlib.mrt.core.DateState
dbpass - Variable in class org.cdlib.mrt.db.DPRFileDB
dburl - Variable in class org.cdlib.mrt.db.DPRFileDB
dbuser - Variable in class org.cdlib.mrt.db.DPRFileDB
DBUtil - Class in org.cdlib.mrt.db: This interface defines the functional API for a Curational Storage Service
DBUtil() - Constructor for class org.cdlib.mrt.db.DBUtil
DC - Class in org.cdlib.mrt.core: retrieve data if type is a manifest
DC() - Constructor for class org.cdlib.mrt.core.DC
debug - Static variable in class org.cdlib.mrt.core.ThreadHandler
debug - Variable in class org.cdlib.mrt.utility.TLockFile
DEBUG - Enum constant in enum org.cdlib.mrt.utility.LoggerInf.LogLevel
DEBUG - Static variable in class org.cdlib.mrt.cloud.VersionMapUtil
DEBUG - Static variable in class org.cdlib.mrt.core.Checkm
DEBUG - Static variable in class org.cdlib.mrt.core.DataciteConvert
DEBUG - Static variable in class org.cdlib.mrt.core.DC
DEBUG - Static variable in class org.cdlib.mrt.core.ManifestBuild
DEBUG - Static variable in class org.cdlib.mrt.core.ManifestRowCheckmAbs
DEBUG - Static variable in class org.cdlib.mrt.db.DBUtil
DEBUG - Static variable in class org.cdlib.mrt.formatter.FormatterAbs
DEBUG - Static variable in class org.cdlib.mrt.formatter.XMLMapper
DEBUG - Static variable in class org.cdlib.mrt.tools.loader.BatchLoader
DEBUG - Static variable in class org.cdlib.mrt.tools.loader.BatchManifest
DEBUG - Static variable in class org.cdlib.mrt.tools.loader.LoaderManifest
DEBUG - Static variable in class org.cdlib.mrt.tools.loader.StoreLoader
DEBUG - Static variable in class org.cdlib.mrt.utility.ArchiveBuilderBase
DEBUG - Static variable in class org.cdlib.mrt.utility.FixityTests
DEBUG - Static variable in class org.cdlib.mrt.utility.MessageDigestValue
DEBUG - Static variable in class org.cdlib.mrt.utility.PairtreeUtil
DEBUG - Static variable in class org.cdlib.mrt.utility.TFrame
DEBUG_LOW - Enum constant in enum org.cdlib.mrt.utility.LoggerInf.LogLevel
DEBUG2 - Enum constant in enum org.cdlib.mrt.utility.LoggerInf.LogLevel
DEBUG3 - Enum constant in enum org.cdlib.mrt.utility.LoggerInf.LogLevel
debugDump - Static variable in class org.cdlib.mrt.core.ComponentContent
debugDump - Variable in class org.cdlib.mrt.core.MessageDigest
dec(String) - Static method in class org.cdlib.mrt.core.Checkm: Encode leading and trailing blanks and pipe
decode(byte[], int, int, int) - Static method in class org.cdlib.mrt.security.Base64: Very low-level access to decoding ASCII characters in the form of a byte array.
decode(String) - Static method in class org.cdlib.mrt.security.Base64: Decodes data from Base64 notation, automatically detecting gzip-compressed data and decompressing it.
decode(String) - Static method in class org.cdlib.mrt.utility.JSONUtil: Replace quote and escape in JSON string
decode(String) - Static method in class org.cdlib.mrt.utility.XMLUtil: Replace Entity references with XML special characters
decode(String, int) - Static method in class org.cdlib.mrt.security.Base64: Decodes data from Base64 notation, automatically detecting gzip-compressed data and decompressing it.
DECODE - Static variable in class org.cdlib.mrt.security.Base64: Specify decoding.
decode4to3(byte[], int, byte[], int, int) - Static method in class org.cdlib.mrt.security.Base64: Decodes four bytes from array source and writes the resulting bytes (up to three of them) to destination.
decodeBase64(String) - Static method in class org.cdlib.mrt.security.SecurityUtil
decodeFileToFile(String, String) - Static method in class org.cdlib.mrt.security.Base64: Reads infile and decodes it to outfile.
decodeFromFile(String) - Static method in class org.cdlib.mrt.security.Base64: Convenience method for reading a base64-encoded file and decoding it.
decodeItem(byte[]) - Static method in class org.cdlib.mrt.utility.ZooCodeUtil
decodeItem(InputStream) - Static method in class org.cdlib.mrt.utility.ZooCodeUtil
decodeToFile(String, String) - Static method in class org.cdlib.mrt.security.Base64: Convenience method for decoding data to a file.
decodeToObject(String) - Static method in class org.cdlib.mrt.security.Base64: Attempts to decode Base64 data and deserialize a Java Object within.
decrypt(String) - Method in class org.cdlib.mrt.security.DesEncrypter
DEFAULT_CHECKSUMTYPE - Static variable in class org.cdlib.mrt.core.FileContent
DEFAULT_TIMEOUT - Static variable in class org.cdlib.mrt.test.TestFileUtil
DEFAULT_TIMEOUT - Static variable in class org.cdlib.mrt.utility.FileTrans
DEFAULT_TIMEOUT - Static variable in class org.cdlib.mrt.utility.FileUtil
DefaultConfigResolver - Class in org.cdlib.mrt.tools
DefaultConfigResolver() - Constructor for class org.cdlib.mrt.tools.DefaultConfigResolver
DefaultConfigResolver(String) - Constructor for class org.cdlib.mrt.tools.DefaultConfigResolver
DEFAULTDELTA - Static variable in class org.cdlib.mrt.tools.loader.StoreLoader
defaultFlush - Variable in class org.cdlib.mrt.utility.TFileLogger
DEFAULTNAME - Static variable in class org.cdlib.mrt.utility.TFileLogger
deleteCurrent() - Method in class org.cdlib.mrt.cloud.VersionMap
deleteDir(File) - Static method in class org.cdlib.mrt.test.TestFileUtil
deleteDir(File) - Static method in class org.cdlib.mrt.utility.FileUtil
deleteEmpty(File, File) - Static method in class org.cdlib.mrt.utility.FileTrans: Remove empty directories
deleteEmptyPath(File) - Static method in class org.cdlib.mrt.test.TestFileUtil: Delete up a directory path until a non-empty node is found Basically remove all empty directory levels above this directory.
deleteEmptyPath(File) - Static method in class org.cdlib.mrt.utility.FileUtil: Delete up a directory path until a non-empty node is found Basically remove all empty directory levels above this directory.
deleteEmptyPath(File, File) - Static method in class org.cdlib.mrt.test.TestFileUtil: Delete up a directory path until a non-empty node is found Basically remove all empty directory levels above this directory.
deleteEmptyPath(File, File) - Static method in class org.cdlib.mrt.utility.FileUtil: Delete up a directory path until a non-empty node is found Basically remove all empty directory levels above this directory.
deleteFileAfterCopy - Variable in class org.cdlib.mrt.utility.ArchiveBuilderBase
deleteFromManList(int) - Method in class org.cdlib.mrt.cloud.VersionMap
deleteHttpResponse(String, int) - Static method in class org.cdlib.mrt.utility.HTTPUtil: Perform a DELETE operation
deleteObject(String, int) - Static method in class org.cdlib.mrt.utility.HTTPUtil: Delete
deleteObject(String, int, int) - Static method in class org.cdlib.mrt.utility.HTTPUtil: getObject with timeout and retry
DeleteOnCloseFileInputStream - Class in org.cdlib.mrt.utility
DeleteOnCloseFileInputStream(File) - Constructor for class org.cdlib.mrt.utility.DeleteOnCloseFileInputStream
DeleteOnCloseFileInputStream(String) - Constructor for class org.cdlib.mrt.utility.DeleteOnCloseFileInputStream
deletePairPath(File, Vector<String>) - Static method in class org.cdlib.mrt.utility.PairtreeUtil: Delete a constructed pair path if path is empty
deleteTempFile(File) - Static method in class org.cdlib.mrt.test.TestFileUtil: Delete file if is temp
deleteTempFile(File) - Static method in class org.cdlib.mrt.utility.FileUtil: Delete file if is temp
deltaActualCount - Variable in class org.cdlib.mrt.cloud.VersionMap.DeltaStats
deltaActualSize - Variable in class org.cdlib.mrt.cloud.VersionMap.DeltaStats
deltaFileCount - Variable in class org.cdlib.mrt.cloud.VersionMap.DeltaStats
DeltaStats() - Constructor for class org.cdlib.mrt.cloud.VersionMap.DeltaStats
deltaTotalSize - Variable in class org.cdlib.mrt.cloud.VersionMap.DeltaStats
description - Variable in enum org.cdlib.mrt.utility.LoggerInf.LogLevel
description - Variable in enum org.cdlib.mrt.utility.TExceptionEnum
desDecrypt(String, String) - Static method in class org.cdlib.mrt.security.SecurityUtil: Use DES to decrypt a string
desEncrypt(String, String) - Static method in class org.cdlib.mrt.security.SecurityUtil: Use DES to encrypt a string
DesEncrypter - Class in org.cdlib.mrt.security: From: http://javaalmanac.com/egs/javax.crypto/DesString.html
deserialize(File) - Static method in class org.cdlib.mrt.utility.SerializeUtil: Take file and build object from it
deserialize(InputStream) - Static method in class org.cdlib.mrt.utility.SerializeUtil: Build serializable object from input stream
destroy() - Method in class org.cdlib.mrt.utility.ListProcessorThreads: stop all active threads (maybe)
detail - Variable in exception org.cdlib.mrt.utility.TException
detail - Variable in exception org.cdlib.mrt.utility.TRuntimeException
detector - Variable in class org.cdlib.mrt.core.Tika
differentContent - Variable in class org.cdlib.mrt.cloud.MatchMap
differentCurrent - Variable in class org.cdlib.mrt.cloud.MatchMap
digest - Variable in class org.cdlib.mrt.cloud.CloudList.CloudEntry
Digest(String) - Constructor for class org.cdlib.mrt.utility.Checksums.Digest
digestList - Variable in class org.cdlib.mrt.utility.Checksums
digestMismatch - Enum constant in enum org.cdlib.mrt.core.FixityStatusType
DirectoryStats - Class in org.cdlib.mrt.utility: Container class, used for tallying Directory file statistics
DirectoryStats() - Constructor for class org.cdlib.mrt.utility.DirectoryStats
display(Method, Object, boolean, int, PrintStream) - Method in class org.cdlib.mrt.formatter.FormatterAbs: process this method for output using reflection
divide(String, String) - Method in class org.cdlib.mrt.utility.TallyTable
doGC - Variable in class org.cdlib.mrt.core.PingState
DOI - Enum constant in enum org.cdlib.mrt.core.Identifier.Namespace
DOMParser - Class in org.cdlib.mrt.utility
DOMParser() - Constructor for class org.cdlib.mrt.utility.DOMParser
DONT_BREAK_LINES - Static variable in class org.cdlib.mrt.security.Base64: Don't break lines when encoding (violates strict Base64 specification)
doParse(InputStream, LoggerInf) - Static method in class org.cdlib.mrt.utility.DOMParser: parse xml contained from input stream InputStream Contains logger param Logger Logger to receive messages, if any
doParse(InputStream, LoggerInf, boolean, boolean, boolean) - Static method in class org.cdlib.mrt.utility.DOMParser: parse xml contained from input stream InputStream Contains logger
doTest() - Method in class org.cdlib.mrt.log.test.TestElement
doTest() - Method in class org.cdlib.mrt.log.test.TestLevel
doTest() - Method in class org.cdlib.mrt.log.test.TestUse
doTest2() - Method in class org.cdlib.mrt.log.test.TestLevel
DPRFileDB - Class in org.cdlib.mrt.db
DPRFileDB(LoggerInf, String, String, String) - Constructor for class org.cdlib.mrt.db.DPRFileDB
DPRFileDB(LoggerInf, Properties) - Constructor for class org.cdlib.mrt.db.DPRFileDB
dump() - Method in class org.cdlib.mrt.utility.PropertiesMapper
dump() - Method in class org.cdlib.mrt.utility.TallyTable: increment a counter with this name and save
dump() - Method in class org.cdlib.mrt.utility.TLockFile.LockContent
dump(String) - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
dump(String) - Method in class org.cdlib.mrt.cloud.CloudList
dump(String) - Method in class org.cdlib.mrt.cloud.CloudProperties
dump(String) - Method in class org.cdlib.mrt.cloud.ManInfo
dump(String) - Method in class org.cdlib.mrt.cloud.MatchMap
dump(String) - Method in class org.cdlib.mrt.cloud.VersionData
dump(String) - Method in class org.cdlib.mrt.cloud.VersionMap
dump(String) - Method in class org.cdlib.mrt.core.FileComponent: Dump FileState information
dump(String) - Method in class org.cdlib.mrt.core.FileContent
dump(String) - Method in class org.cdlib.mrt.formatter.NSMap.NSEntry
dump(String) - Method in class org.cdlib.mrt.formatter.XMLMapper
dump(String) - Method in class org.cdlib.mrt.tools.loader.LoaderInfo
dump(String) - Method in class org.cdlib.mrt.utility.Checksums.Digest
dump(String) - Method in class org.cdlib.mrt.utility.FixityTests.FixityResult: Dump the content of this object to a string for logging
dump(String) - Method in class org.cdlib.mrt.utility.MessageDigestValue: Dump the content of this object to a string for logging
dump(String) - Method in exception org.cdlib.mrt.utility.TException
dump(String) - Method in exception org.cdlib.mrt.utility.TRuntimeException
dump(String, LinkedHashList<String, String>) - Static method in class org.cdlib.mrt.security.LDAPUtil
dump(LoggerInf, String) - Method in class org.cdlib.mrt.utility.MProperties: Build string containing display form of Properties contents
dumpEntry(String, String) - Method in class org.cdlib.mrt.utility.FixityTests: format entry for log
dumpEntry(String, String) - Method in class org.cdlib.mrt.utility.MessageDigestValue: format entry for log
dumpHeaders(String, String[]) - Method in class org.cdlib.mrt.core.Checkm
dumpHeaders(String, String[]) - Method in class org.cdlib.mrt.core.ManifestRowCheckmAbs
dumpHttpResponse(HttpResponse, int) - Static method in class org.cdlib.mrt.utility.HTTPUtil: Used to trace IT calls
dumpJson() - Method in class org.cdlib.mrt.tools.YamlParser
dumpJsonForKey(String) - Method in class org.cdlib.mrt.tools.YamlParser
dumpJsonObject(Object) - Method in class org.cdlib.mrt.tools.YamlParser
dumpLine() - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
dumpList(String, Element, String, LoggerInf) - Static method in class org.cdlib.mrt.core.DC
dumpProp() - Method in class org.cdlib.mrt.utility.TallyTable: increment a counter with this name and save
dumpProperties(String, Properties) - Static method in class org.cdlib.mrt.utility.PropertiesUtil: Build string containing display form of Properties contents
dumpProperties(String, Properties, int) - Static method in class org.cdlib.mrt.utility.PropertiesUtil: Build string containing display form of Properties contents
dumpStatus() - Method in class org.cdlib.mrt.utility.ListProcessorThreads.CloseQueue
dumpStatus(String, Properties) - Method in class org.cdlib.mrt.tools.loader.BatchLoader

E

enc(String) - Method in class org.cdlib.mrt.cloud.ManifestStr
enc(String) - Static method in class org.cdlib.mrt.core.Checkm: simplied encoding that encodes a leading or trailing blank and any internal vertical bars
encode - Variable in class org.cdlib.mrt.security.Base64.InputStream
encode - Variable in class org.cdlib.mrt.security.Base64.OutputStream
encode(String) - Static method in class org.cdlib.mrt.utility.JSONUtil: Replace XML special characters with Entity references
encode(String, String) - Static method in class org.cdlib.mrt.utility.URLEncoder
ENCODE - Static variable in class org.cdlib.mrt.security.Base64: Specify encoding.
encode3to4(byte[], byte[], int, int) - Static method in class org.cdlib.mrt.security.Base64: Encodes up to the first three bytes of array threeBytes and returns a four-byte array in Base64 notation.
encode3to4(byte[], int, int, byte[], int, int) - Static method in class org.cdlib.mrt.security.Base64: Encodes up to three bytes of the array source and writes the resulting four Base64 bytes to destination.
encodeBase64(byte[]) - Static method in class org.cdlib.mrt.security.SecurityUtil
encodeBase64(InputStream) - Static method in class org.cdlib.mrt.security.SecurityUtil
encodeBase64(String) - Static method in class org.cdlib.mrt.security.SecurityUtil
encodeBytes(byte[]) - Static method in class org.cdlib.mrt.security.Base64: Encodes a byte array into Base64 notation.
encodeBytes(byte[], int) - Static method in class org.cdlib.mrt.security.Base64: Encodes a byte array into Base64 notation.
encodeBytes(byte[], int, int) - Static method in class org.cdlib.mrt.security.Base64: Encodes a byte array into Base64 notation.
encodeBytes(byte[], int, int, int) - Static method in class org.cdlib.mrt.security.Base64: Encodes a byte array into Base64 notation.
encodeFileToFile(String, String) - Static method in class org.cdlib.mrt.security.Base64: Reads infile and encodes it to outfile.
encodeFromFile(String) - Static method in class org.cdlib.mrt.security.Base64: Convenience method for reading a binary file and base64-encoding it.
encodeItem(Object, OutputStream) - Static method in class org.cdlib.mrt.utility.ZooCodeUtil
encodeItem(Properties) - Static method in class org.cdlib.mrt.utility.ZooCodeUtil
encodeName(String) - Static method in class org.cdlib.mrt.utility.XMLUtil: Replace XML special characters with Entity references
encodeObject(Serializable) - Static method in class org.cdlib.mrt.security.Base64: Serializes an object and returns the Base64-encoded version of that serialized object.
encodeObject(Serializable, int) - Static method in class org.cdlib.mrt.security.Base64: Serializes an object and returns the Base64-encoded version of that serialized object.
encodeToFile(byte[], String) - Static method in class org.cdlib.mrt.security.Base64: Convenience method for encoding data to a file.
encodeValue(String) - Static method in class org.cdlib.mrt.utility.XMLUtil: Replace XML special characters with Entity references
encoding - Variable in enum org.cdlib.mrt.formatter.FormatInfo
encoding - Variable in enum org.cdlib.mrt.formatter.FormatType
encrypt(String) - Method in class org.cdlib.mrt.security.DesEncrypter
encrypt(String) - Static method in class org.cdlib.mrt.security.SecurityUtil: Do an MD5 encryption on a string
Note that the encryption does utf-8 conversion of password to byte array
encrypt(String, String) - Static method in class org.cdlib.mrt.security.SecurityUtil: Do an MD5 encryption on a string
Note that the encryption does utf-8 conversion of password to byte array
end() - Method in class org.cdlib.mrt.tools.loader.BatchLoader
end() - Method in class org.cdlib.mrt.tools.loader.StoreLoader
end() - Method in class org.cdlib.mrt.utility.ListProcessorSimple: Process on EnrichmentList item
end(String) - Static method in class org.cdlib.mrt.utility.TimerUtil
end(LoggerInf, String) - Static method in class org.cdlib.mrt.utility.TimerUtil
endEle(String) - Method in class org.cdlib.mrt.cloud.ManifestStr
endElement(String, String, String) - Method in class org.cdlib.mrt.cloud.ManifestSAX
entry - Variable in class org.cdlib.mrt.formatter.XMLMapper
eof - Variable in class org.cdlib.mrt.core.Manifest
EOL - Variable in class org.cdlib.mrt.utility.TFileLogger
equals(Properties, Properties) - Static method in class org.cdlib.mrt.utility.PropertiesUtil: compare 2 Properties
equals(FileComponent) - Method in class org.cdlib.mrt.core.FileComponent: See if this FileState is equal to another FileState
equals(MessageDigest) - Method in class org.cdlib.mrt.core.MessageDigest: Matches one message digest against another
EQUALS_SIGN - Static variable in class org.cdlib.mrt.security.Base64: The equals sign (=) as a byte.
EQUALS_SIGN_ENC - Static variable in class org.cdlib.mrt.security.Base64
escapeQuotes(String) - Static method in class org.cdlib.mrt.utility.StringUtil: replace all occurances of single quote (') with two single quotes.
etag - Variable in class org.cdlib.mrt.cloud.CloudList.CloudEntry
exception - Enum constant in enum org.cdlib.mrt.core.ProcessStatus
exec(Connection, String, LoggerInf) - Static method in class org.cdlib.mrt.db.DBUtil
executeSQLRequest(String, Connection) - Static method in class org.cdlib.mrt.utility.SQLUtil: Executes a SQL request against a specified database using the supplied connection
expireLease() - Method in class org.cdlib.mrt.utility.MrtConnection
ext - Variable in class org.cdlib.mrt.formatter.NSMap.NSEntry
extension - Variable in enum org.cdlib.mrt.formatter.FormatInfo
extension - Variable in enum org.cdlib.mrt.formatter.FormatType
extension - Variable in enum org.cdlib.mrt.utility.ArchiveBuilder.ArchiveType
extension - Variable in enum org.cdlib.mrt.utility.ArchiveBuilderBase.ArchiveType
EXTERNAL_SERVICE_FAILS - Enum constant in enum org.cdlib.mrt.utility.TExceptionEnum
EXTERNAL_SERVICE_UNAVAILABLE - Enum constant in enum org.cdlib.mrt.utility.TExceptionEnum
EXTERNAL_SERVICE_UNAVAILABLE(Exception) - Constructor for exception org.cdlib.mrt.utility.TException.EXTERNAL_SERVICE_UNAVAILABLE
EXTERNAL_SERVICE_UNAVAILABLE(Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.EXTERNAL_SERVICE_UNAVAILABLE
EXTERNAL_SERVICE_UNAVAILABLE(String) - Constructor for exception org.cdlib.mrt.utility.TException.EXTERNAL_SERVICE_UNAVAILABLE
EXTERNAL_SERVICE_UNAVAILABLE(String) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.EXTERNAL_SERVICE_UNAVAILABLE
EXTERNAL_SERVICE_UNAVAILABLE(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TException.EXTERNAL_SERVICE_UNAVAILABLE
EXTERNAL_SERVICE_UNAVAILABLE(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.EXTERNAL_SERVICE_UNAVAILABLE
extractBaseDirectory - Variable in class org.cdlib.mrt.tools.loader.BatchLoader
extractBaseDirectory - Variable in class org.cdlib.mrt.tools.loader.StoreLoader
extractDirectories - Variable in class org.cdlib.mrt.tools.loader.BatchLoader
extractDirectories - Variable in class org.cdlib.mrt.tools.loader.BatchManifest
extractDirectory - Variable in class org.cdlib.mrt.tools.loader.LoaderInfo
extractFileCnt(File, long) - Static method in class org.cdlib.mrt.test.TestFileUtil
extractFileCnt(File, long) - Static method in class org.cdlib.mrt.utility.FileUtil
extractLockContent(File) - Method in class org.cdlib.mrt.utility.TLockFile: Lock info extracted from file
extractProfiles(String, String, String) - Method in class org.cdlib.mrt.security.CertsLDAP
extractProfiles(String, String, String, String) - Static method in class org.cdlib.mrt.security.LDAPUtil

F

failed - Enum constant in enum org.cdlib.mrt.core.ProcessStatus
file - Variable in class org.cdlib.mrt.core.FileContent
file - Variable in class org.cdlib.mrt.formatter.TypeFile
file2file(File, File) - Static method in class org.cdlib.mrt.test.TestFileUtil: Copy one file to another
file2file(File, File) - Static method in class org.cdlib.mrt.utility.FileUtil: Copy one file to another
file2String(File) - Static method in class org.cdlib.mrt.test.TestFileUtil: Extract the value of file to a string (utf-8)
file2String(File) - Static method in class org.cdlib.mrt.utility.FileUtil: Extract the value of file to a string (utf-8)
file2String(File, String) - Static method in class org.cdlib.mrt.test.TestFileUtil: Extract the value of file to a string (utf-8)
file2String(File, String) - Static method in class org.cdlib.mrt.utility.FileUtil: Extract the value of file to a string (utf-8)
file2String(File, String) - Static method in class org.cdlib.mrt.utility.ListProcessorThreads: Extract the value of file to a string (utf-8)
fileCnt - Variable in class org.cdlib.mrt.utility.DirectoryStats
fileComponent - Variable in class org.cdlib.mrt.cloud.ManifestSAX
fileComponent - Variable in class org.cdlib.mrt.core.ManifestRowCheckmAbs
FileComponent - Class in org.cdlib.mrt.core
FileComponent() - Constructor for class org.cdlib.mrt.core.FileComponent: Generic constructor
FileComponent(FileComponent) - Constructor for class org.cdlib.mrt.core.FileComponent
FileComponentContentInf - Interface in org.cdlib.mrt.core: interface that identifies that a specific ManifestRow uses FileState data Manifest processing can use basically any form of line delimited format.
fileContent - Variable in class org.cdlib.mrt.core.FileContent
FileContent - Class in org.cdlib.mrt.core: Returns both File and File state information
FileContent(File, String, LoggerInf) - Constructor for class org.cdlib.mrt.core.FileContent: Constructor that validates passed arguments
FileContent(FileComponent, InputStream, File) - Constructor for class org.cdlib.mrt.core.FileContent: Constructore
FileContentInf - Interface in org.cdlib.mrt.core: Response File and FileState data
fileDisposition - Variable in class org.cdlib.mrt.core.FileContent
fileFromURL(URL) - Static method in class org.cdlib.mrt.test.TestFileUtil: Get a file from a URL value - bug in 1.5
fileFromURL(URL) - Static method in class org.cdlib.mrt.utility.FileUtil: Get a file from a URL value - bug in 1.5
fileHashList - Variable in class org.cdlib.mrt.cloud.VersionMap
fileID - Variable in class org.cdlib.mrt.cloud.CloudList.CloudEntry
fileLastModified - Enum constant in enum org.cdlib.mrt.core.Checkm.ColMap
fileLoadLevel - Static variable in class org.cdlib.mrt.utility.MProperties
fileName - Enum constant in enum org.cdlib.mrt.core.Checkm.ColMap
FILEPATH - Variable in class org.cdlib.mrt.core.FileComponent
fileSize - Enum constant in enum org.cdlib.mrt.core.Checkm.ColMap
fileSize - Variable in class org.cdlib.mrt.utility.DirectoryStats
fileSizeMatch - Variable in class org.cdlib.mrt.utility.FixityTests.FixityResult
FileTrans - Class in org.cdlib.mrt.utility: This routine is used to normalize file names using a provided translation Map If the map is not provided then a default normalization translation is used Default translation is made on x'80' - x'9F' Example: default FileTrans fileTrans = new FileTrans(sourceFile); try { fileTrans.translate(); ...
FileTrans(File) - Constructor for class org.cdlib.mrt.utility.FileTrans: File name normalization using default translation Map
FileTrans(File, Map<Character, Character>) - Constructor for class org.cdlib.mrt.utility.FileTrans: File name normalization using provided translation Map
fileURL - Enum constant in enum org.cdlib.mrt.core.Checkm.ColMap
FileUtil - Class in org.cdlib.mrt.utility: Generalized file utilities
FileUtil() - Constructor for class org.cdlib.mrt.utility.FileUtil
fillComponent(FileComponent) - Method in class org.cdlib.mrt.cloud.VersionMap
find(String, String) - Method in class org.cdlib.mrt.security.CertsLDAP
finishDigest(Checksums.Digest) - Static method in class org.cdlib.mrt.utility.Checksums
FIXITY_CHECK_FAILS - Enum constant in enum org.cdlib.mrt.utility.TExceptionEnum
FIXITY_CHECK_FAILS(Exception) - Constructor for exception org.cdlib.mrt.utility.TException.FIXITY_CHECK_FAILS
FIXITY_CHECK_FAILS(Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.FIXITY_CHECK_FAILS
FIXITY_CHECK_FAILS(String) - Constructor for exception org.cdlib.mrt.utility.TException.FIXITY_CHECK_FAILS
FIXITY_CHECK_FAILS(String) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.FIXITY_CHECK_FAILS
FIXITY_CHECK_FAILS(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TException.FIXITY_CHECK_FAILS
FIXITY_CHECK_FAILS(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.FIXITY_CHECK_FAILS
FixityResult() - Constructor for class org.cdlib.mrt.utility.FixityTests.FixityResult
fixityStatusType - Variable in enum org.cdlib.mrt.core.FixityStatusType
FixityStatusType - Enum in org.cdlib.mrt.core: General digital identifier
FixityTests - Class in org.cdlib.mrt.utility: Perform Fixity tests
FixityTests(File, String, LoggerInf) - Constructor for class org.cdlib.mrt.utility.FixityTests: Constructur - primary form Performs checksum creation on file and extacts file size
FixityTests(InputStream, String, LoggerInf) - Constructor for class org.cdlib.mrt.utility.FixityTests: Constructer - primary form Performs checksum creation on file and extacts file size
FixityTests.FixityResult - Class in org.cdlib.mrt.utility: Result of fixity match
flush() - Method in interface org.cdlib.mrt.utility.LoggerInf: Flush the log
flush() - Method in class org.cdlib.mrt.utility.TFileLogger: Flushes the log
flushBase64() - Method in class org.cdlib.mrt.security.Base64.OutputStream: Method added by PHIL.
form - Variable in enum org.cdlib.mrt.formatter.FormatInfo
form - Variable in enum org.cdlib.mrt.formatter.FormatType
format - Enum constant in enum org.cdlib.mrt.core.ProcessStatus
format(StateInf, PrintStream) - Method in class org.cdlib.mrt.formatter.FormatterAbs
format(StateInf, PrintStream) - Method in interface org.cdlib.mrt.formatter.FormatterInf: Create ouput format.
format(StateInf, PrintStream) - Method in class org.cdlib.mrt.formatter.JSONFormatter
format(StateInf, PrintStream) - Method in class org.cdlib.mrt.formatter.XHTMLFormatter
FORMAT_NAME_MULTIPART - Static variable in class org.cdlib.mrt.core.StorageAddClient
FORMAT_NAME_POST - Static variable in class org.cdlib.mrt.core.StorageAddClient
formatClass(Class, Object, int, PrintStream) - Method in class org.cdlib.mrt.formatter.FormatterAbs: Format this class.
FormatInfo - Enum in org.cdlib.mrt.formatter
formatNamedNode(String, Object, boolean, int, PrintStream) - Method in class org.cdlib.mrt.formatter.FormatterAbs: Format a node.
formatNode(Object, boolean, int, PrintStream) - Method in class org.cdlib.mrt.formatter.FormatterAbs
formatObject(Object, int, PrintStream) - Method in class org.cdlib.mrt.formatter.FormatterAbs: Use reflection to format this object
FormatterAbs - Class in org.cdlib.mrt.formatter: FormatterAbs is the base formatting class.
FormatterAbs(LoggerInf) - Constructor for class org.cdlib.mrt.formatter.FormatterAbs: Constructor
FormatterInf - Interface in org.cdlib.mrt.formatter
FormatterInf.Format - Enum in org.cdlib.mrt.formatter: Supported types of output formats
formatterType - Variable in class org.cdlib.mrt.formatter.FormatterAbs
formatType - Variable in class org.cdlib.mrt.formatter.TypeFile
FormatType - Enum in org.cdlib.mrt.formatter
fromDir - Variable in class org.cdlib.mrt.utility.ArchiveBuilder
fromDir - Variable in class org.cdlib.mrt.utility.ArchiveBuilderBase

G

GATEWAY_TIMEOUT - Enum constant in enum org.cdlib.mrt.utility.TExceptionEnum
GATEWAY_TIMEOUT(Exception) - Constructor for exception org.cdlib.mrt.utility.TException.GATEWAY_TIMEOUT
GATEWAY_TIMEOUT(String) - Constructor for exception org.cdlib.mrt.utility.TException.GATEWAY_TIMEOUT
GATEWAY_TIMEOUT(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TException.GATEWAY_TIMEOUT
GENERAL_EXCEPTION - Enum constant in enum org.cdlib.mrt.utility.TExceptionEnum
GENERAL_EXCEPTION(Exception) - Constructor for exception org.cdlib.mrt.utility.TException.GENERAL_EXCEPTION
GENERAL_EXCEPTION(Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.GENERAL_EXCEPTION
GENERAL_EXCEPTION(String) - Constructor for exception org.cdlib.mrt.utility.TException.GENERAL_EXCEPTION
GENERAL_EXCEPTION(String) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.GENERAL_EXCEPTION
GENERAL_EXCEPTION(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TException.GENERAL_EXCEPTION
GENERAL_EXCEPTION(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.GENERAL_EXCEPTION
get(int) - Method in class org.cdlib.mrt.cloud.CloudList
get(int) - Method in class org.cdlib.mrt.formatter.NSMap
get(Properties, String) - Static method in class org.cdlib.mrt.utility.GetProp
get(K) - Method in class org.cdlib.mrt.utility.LinkedHashList: Return a list based on this key
getAccessExcp() - Method in exception org.cdlib.mrt.utility.TException
getAccumCounter() - Method in class org.cdlib.mrt.utility.TimerUtil
getAccumTimer() - Method in class org.cdlib.mrt.utility.TimerUtil
getActiveCnt() - Method in class org.cdlib.mrt.core.ThreadHandler
getActualCnt() - Method in class org.cdlib.mrt.cloud.VersionMap
getActualSize() - Method in class org.cdlib.mrt.cloud.VersionMap
getAddBytes() - Method in class org.cdlib.mrt.log.utility.AddStateEntry
getAddFiles() - Method in class org.cdlib.mrt.log.utility.AddStateEntry
getAddStateEntry(String, String) - Static method in class org.cdlib.mrt.log.utility.AddStateEntry
getAddStateEntryGen(String, String, String) - Static method in class org.cdlib.mrt.log.utility.AddStateEntryGen
getAddStateEntryGen(String, String, String, Integer) - Static method in class org.cdlib.mrt.log.utility.AddStateEntryGen
getAddVersions() - Method in class org.cdlib.mrt.log.utility.AddStateEntry
getAlgorithm() - Method in class org.cdlib.mrt.core.MessageDigest: Return checksum type
getAlgorithm(String) - Static method in class org.cdlib.mrt.core.MessageDigest
getAlgorithm(String) - Static method in class org.cdlib.mrt.utility.Checksums
getAlgorithm(String) - Static method in class org.cdlib.mrt.utility.MessageDigestValue: Convert a string form of checksum type to an enum form lowercase and strip punctuation
getAllProperties() - Method in class org.cdlib.mrt.utility.TFrame: Returns all framework properties
getANVLFormatter(LoggerInf) - Static method in class org.cdlib.mrt.formatter.FormatterAbs: get ANVL formatter
getArchiveBuilder(File, File, LoggerInf, ArchiveBuilder.ArchiveType) - Static method in class org.cdlib.mrt.utility.ArchiveBuilder: Factory routine to get specific ArchiveBuilder for supplied ArchiveType
getArchiveBuilder(File, OutputStream, LoggerInf, ArchiveBuilder.ArchiveType) - Static method in class org.cdlib.mrt.utility.ArchiveBuilder: Factory routine to get specific ArchiveBuilder for supplied ArchiveType
getArchiveBuilderBase(File, File, LoggerInf, ArchiveBuilderBase.ArchiveType) - Static method in class org.cdlib.mrt.utility.ArchiveBuilderBase: Factory routine to get specific ArchiveBuilder for supplied ArchiveType
getArchiveBuilderBase(File, OutputStream, LoggerInf, ArchiveBuilderBase.ArchiveType) - Static method in class org.cdlib.mrt.utility.ArchiveBuilderBase: Factory routine to get specific ArchiveBuilder for supplied ArchiveType
getAsProperties() - Method in class org.cdlib.mrt.utility.TallyTable
getAttempts() - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
getAwsVersion() - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
getBasicAuthenticationHeader(String, String) - Static method in class org.cdlib.mrt.utility.HTTPUtil
getBatchComponent() - Method in class org.cdlib.mrt.tools.loader.LoaderManifest
getBool(Properties, String) - Static method in class org.cdlib.mrt.utility.GetProp
getBuildFileCnt() - Method in class org.cdlib.mrt.utility.ArchiveBuilderBase
getBuildTimeMs() - Method in class org.cdlib.mrt.utility.ArchiveBuilderBase
getBytes() - Method in class org.cdlib.mrt.log.utility.AddStateEntry
getBytes() - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
getChecksum() - Method in class org.cdlib.mrt.utility.MessageDigestValue: return constructed hex checksum
getChecksum(String) - Method in class org.cdlib.mrt.utility.Checksums
getChecksumBit64() - Method in class org.cdlib.mrt.utility.MessageDigestValue: return constructed Bit 64 checksum
getChecksumBit64(String) - Static method in class org.cdlib.mrt.utility.MessageDigestValue: return constructed Bit 64 checksum
getCheckSumBit64(byte[]) - Static method in class org.cdlib.mrt.utility.MessageDigestValue
getChecksumHex(String) - Static method in class org.cdlib.mrt.utility.MessageDigestValue: return hex checksum from Bit 64 checksum
getChecksumJavaAlgorithm() - Method in class org.cdlib.mrt.utility.MessageDigestValue
getChecksums(String[], File) - Static method in class org.cdlib.mrt.utility.Checksums
getChecksums(String[], InputStream) - Static method in class org.cdlib.mrt.utility.Checksums
getChecksumType() - Method in class org.cdlib.mrt.utility.MessageDigestValue: return constructed checksum type
getClassName() - Method in exception org.cdlib.mrt.utility.TException: Return name of class where this exception occurred
getClassName() - Method in exception org.cdlib.mrt.utility.TRuntimeException: Return name of class where this exception occurred
getClassNames(String, String, String, String) - Static method in class org.cdlib.mrt.security.LDAPUtil
getClientProperties() - Method in class org.cdlib.mrt.utility.ListProcessorSimple
getClientProperties() - Method in class org.cdlib.mrt.utility.ListProcessorThreads
getCnt() - Method in class org.cdlib.mrt.tools.loader.LoaderManifest
getCnt(K) - Method in class org.cdlib.mrt.utility.LinkedHashList: Number of entries matching this key
getCol(Checkm.ColMap) - Method in class org.cdlib.mrt.core.Checkm: From column content type get column position
getColumns() - Method in class org.cdlib.mrt.core.ManifestRowAdd
getColumns() - Method in class org.cdlib.mrt.core.ManifestRowBatch
getColumns() - Method in class org.cdlib.mrt.core.ManifestRowCheckmAbs
getColumns() - Method in class org.cdlib.mrt.core.ManifestRowIngest
getColumns() - Method in class org.cdlib.mrt.core.ManifestRowObject
getColumns(String) - Static method in class org.cdlib.mrt.core.Checkm
getComponentClass(String) - Method in class org.cdlib.mrt.utility.TFrame: Gets a class associated with a property name in the framework's properties.
getComponentFile() - Method in class org.cdlib.mrt.core.FileComponent: Get a file for this Component
getComponents() - Method in class org.cdlib.mrt.tools.loader.LoaderManifest
getConnection() - Method in class org.cdlib.mrt.db.DBConnectionPool
getConnection() - Method in class org.cdlib.mrt.utility.MrtConnectionPool
getConnection(boolean) - Method in class org.cdlib.mrt.db.DBConnectionPool
getConnection(boolean) - Method in class org.cdlib.mrt.db.DPRFileDB
getConnection(boolean) - Method in class org.cdlib.mrt.utility.MrtConnectionPool
getConnectionOriginal(boolean) - Method in class org.cdlib.mrt.db.DPRFileDB
getConnectionWithReconnect(boolean) - Method in class org.cdlib.mrt.db.DPRFileDB
getContainer() - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
getContentType() - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
getCount() - Method in class org.cdlib.mrt.utility.TimerUtil.Stat
getCount(String) - Method in class org.cdlib.mrt.utility.TallyTable: Get the count for this key
getCountKeys() - Method in class org.cdlib.mrt.utility.TallyTable: Build sorted array of tally keys
getCRC(File, LoggerInf) - Static method in class org.cdlib.mrt.utility.ArchiveBuilderBase
getCreated() - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
getCreated() - Method in class org.cdlib.mrt.core.FileComponent: Last modified Date
getCreator() - Method in class org.cdlib.mrt.core.FileComponent
getCurrent() - Method in class org.cdlib.mrt.cloud.VersionData
getCurrent() - Method in class org.cdlib.mrt.cloud.VersionMap
getCurrentDate() - Static method in class org.cdlib.mrt.utility.DateUtil: get current Date
getCurrentDatePlus(long) - Static method in class org.cdlib.mrt.utility.DateUtil: return the Date for current + millisecond update
getCurrentDateString(String) - Static method in class org.cdlib.mrt.utility.DateUtil: return String form of current date using passed pattern
getCurrentIsoDate() - Static method in class org.cdlib.mrt.utility.DateUtil: Get the current IsoDate String
getCurrentVersion() - Method in class org.cdlib.mrt.log.utility.AddStateEntry
getCurrentVersion() - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
getDate() - Method in class org.cdlib.mrt.core.DateState: Get standard Date for this State
getDate() - Method in class org.cdlib.mrt.core.FileComponent
getDateDisplay() - Method in class org.cdlib.mrt.core.FileComponent: Display LastModifiedDate as Iso Date
getDateFromString(String, String) - Static method in class org.cdlib.mrt.utility.DateUtil: Build a Date object using a String with an extraction pattern
getDateString(Date, String) - Static method in class org.cdlib.mrt.utility.DateUtil: Return String formatted form of passed Date
getDateTime() - Method in class org.cdlib.mrt.core.PingState
getDBConnectionPool(String, String, String) - Static method in class org.cdlib.mrt.db.DBConnectionPool
getDC(Document, int, LoggerInf) - Static method in class org.cdlib.mrt.core.DC: Build a LinkedHashList containing DC values extracted from METS
getDCFromModsMets(LinkedHashList<String, String>, Document, LoggerInf) - Static method in class org.cdlib.mrt.core.DC: From a DOM METS containing MODS return list of DC values
getDecimal(String) - Static method in class org.cdlib.mrt.utility.ArchiveBuilderBase
getDeleteBytes() - Method in class org.cdlib.mrt.log.utility.AddStateEntry
getDeleteFiles() - Method in class org.cdlib.mrt.log.utility.AddStateEntry
getDeleteVersions() - Method in class org.cdlib.mrt.log.utility.AddStateEntry
getDeltaStats() - Method in class org.cdlib.mrt.cloud.VersionMap
getDescription() - Method in exception org.cdlib.mrt.utility.TException: get a String message associated with the MExceptionEnum.-- non-static version
getDescription() - Method in enum org.cdlib.mrt.utility.TExceptionEnum
getDescription() - Method in exception org.cdlib.mrt.utility.TRuntimeException: get a String message associated with the MExceptionEnum.-- non-static version
getDescription(TExceptionEnum) - Static method in exception org.cdlib.mrt.utility.TException: get a String message associated with an integer mnemonic code
getDescription(TExceptionEnum) - Static method in exception org.cdlib.mrt.utility.TRuntimeException: get a String message associated with an integer mnemonic code
getDetail() - Method in exception org.cdlib.mrt.utility.TException: get the String detail message, more information on an error
getDetail() - Method in exception org.cdlib.mrt.utility.TRuntimeException: get the String detail message, more information on an error
getDiffCurrent() - Method in class org.cdlib.mrt.utility.TLockFile: Return the difference in seconds between current lock and an extracted lock
getDigest() - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
getDigestDisplay() - Method in class org.cdlib.mrt.core.FileComponent: Dump Set of Digest values
getDigestList() - Method in class org.cdlib.mrt.utility.Checksums
getDirectoryFiles(File, Vector<File>) - Static method in class org.cdlib.mrt.test.TestFileUtil: Build list of files for a directory
getDirectoryFiles(File, Vector<File>) - Static method in class org.cdlib.mrt.utility.FileUtil: Build list of files for a directory
getDirectorySize(File) - Static method in class org.cdlib.mrt.test.TestFileUtil: Return the size of all files in Directory
getDirectorySize(File) - Static method in class org.cdlib.mrt.utility.FileUtil: Return the size of all files in Directory
getDirectoryStats(File) - Static method in class org.cdlib.mrt.test.TestFileUtil: Return the count and size of all files in Directory
getDirectoryStats(File) - Static method in class org.cdlib.mrt.utility.FileUtil: Return the count and size of all files in Directory
getDirectoryStats(File, DirectoryStats) - Static method in class org.cdlib.mrt.test.TestFileUtil: Return the count and size of all files in Directory
getDirectoryStats(File, DirectoryStats) - Static method in class org.cdlib.mrt.utility.FileUtil: Return the count and size of all files in Directory
getDummyIngestStatus() - Method in class org.cdlib.mrt.tools.loader.BatchLoader
getDurationMs() - Method in class org.cdlib.mrt.log.utility.AddStateEntry
getDurationMs() - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
getEncoding() - Method in enum org.cdlib.mrt.formatter.FormatInfo: return encoding of this format
getEncoding() - Method in enum org.cdlib.mrt.formatter.FormatType: return encoding of this format
getEntry(String) - Method in class org.cdlib.mrt.formatter.NSMap
getEntry(StateInf) - Method in class org.cdlib.mrt.formatter.NSMap
getEntryName(File) - Method in class org.cdlib.mrt.utility.ArchiveBuilder: Normalize archive entry name
getEntryName(File) - Method in class org.cdlib.mrt.utility.ArchiveBuilderBase: Normalize archive entry name
getEpochUTCDate() - Static method in class org.cdlib.mrt.utility.DateUtil: Get current date a Epoch seconds
getError() - Method in exception org.cdlib.mrt.utility.TException: return the description
getError() - Method in exception org.cdlib.mrt.utility.TRuntimeException: return the description
getErrorMaxLevel() - Method in interface org.cdlib.mrt.utility.LoggerInf: get threshold for error message creation
getErrorMaxLevel() - Method in class org.cdlib.mrt.utility.TFileLogger: get threshold for error message creation
getEtag() - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
getEx(Properties, String) - Static method in class org.cdlib.mrt.utility.GetProp
getExNumInt(Properties, String) - Static method in class org.cdlib.mrt.utility.GetProp
getExtension() - Method in enum org.cdlib.mrt.formatter.FormatInfo: Extension for this format
getExtension() - Method in enum org.cdlib.mrt.formatter.FormatType: Extension for this format
getExtension() - Method in enum org.cdlib.mrt.utility.ArchiveBuilder.ArchiveType
getExtension() - Method in enum org.cdlib.mrt.utility.ArchiveBuilderBase.ArchiveType
getFile() - Method in class org.cdlib.mrt.core.FileContent
getFile() - Method in interface org.cdlib.mrt.core.FileContentInf: Requested File
getFile(URL, File, int, LoggerInf) - Static method in class org.cdlib.mrt.utility.HttpGet
getFile(URL, File, long, int, LoggerInf) - Static method in class org.cdlib.mrt.utility.HttpGet
getFileCnt() - Method in class org.cdlib.mrt.utility.DirectoryStats: get number of files
getFileComponent() - Method in interface org.cdlib.mrt.core.FileComponentContentInf: Get FileState
getFileComponent() - Method in class org.cdlib.mrt.core.FileContent
getFileComponent() - Method in interface org.cdlib.mrt.core.FileContentInf: Get File State information
getFileComponent() - Method in class org.cdlib.mrt.core.ManifestRowCheckmAbs
getFileComponent(int, String) - Method in class org.cdlib.mrt.cloud.VersionMap
getFileComponent(String) - Method in class org.cdlib.mrt.core.ComponentContent
getFileComponents() - Method in class org.cdlib.mrt.core.ComponentContent
getFileComponentTable() - Method in class org.cdlib.mrt.core.ComponentContent
getFileContent(File, String, LoggerInf) - Static method in class org.cdlib.mrt.core.FileContent: Factory class for FileContent when FileState does not exist
getFileContent(File, LoggerInf) - Static method in class org.cdlib.mrt.core.FileContent: Factory class for FileContent when FileState does not exist
getFileContent(FileComponent, InputStream, File) - Static method in class org.cdlib.mrt.core.FileContent: Factory class to return FileContent
getFileDisposition() - Method in class org.cdlib.mrt.core.FileContent
getFileDisposition() - Method in interface org.cdlib.mrt.core.FileContentInf: File disposition for this passed file
getFileID() - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
getFileID() - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
getFileProperties(String) - Method in class org.cdlib.mrt.utility.ListProcessorBase: Get properties from using a file name to load
getFiles() - Method in class org.cdlib.mrt.log.utility.AddStateEntry
getFiles() - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
getFileSize() - Method in class org.cdlib.mrt.utility.DirectoryStats: get accumulated size of files
getFirstElement(K) - Method in class org.cdlib.mrt.utility.LinkedHashList
getFirstNode(Element, String) - Static method in class org.cdlib.mrt.utility.DOMParser: Stub method: Return first decendant element matching a specific string name (xpath=name[1]
getFirstNode(Element, String, LoggerInf) - Static method in class org.cdlib.mrt.utility.DOMParser: Return first decendant element matching a specific string name (xpath=name[1] Contains logger
getFixityStatusType(String) - Static method in enum org.cdlib.mrt.core.FixityStatusType
getForm() - Method in enum org.cdlib.mrt.formatter.FormatInfo: return form of this format
getForm() - Method in enum org.cdlib.mrt.formatter.FormatType: return form of this format
getFormatter(FormatterInf.Format, LoggerInf) - Static method in class org.cdlib.mrt.formatter.FormatterAbs: Get typped formatter
getFormatterType() - Method in class org.cdlib.mrt.formatter.FormatterAbs: Type of formatter being used
getFormatterType() - Method in interface org.cdlib.mrt.formatter.FormatterInf: Get the requested format type
getFrameworkID() - Method in class org.cdlib.mrt.utility.TFileLogger: Get the FrameworkID - imbed thread name if requested
getFreeMemory() - Method in class org.cdlib.mrt.core.PingState
getFTPInputStream(String, int) - Static method in class org.cdlib.mrt.utility.HTTPUtil
getHeader(String) - Method in class org.cdlib.mrt.formatter.XMLMapper: return a header for the XML - this property is required
getHeaders() - Method in class org.cdlib.mrt.core.ManifestRowCheckmAbs
getHeaders() - Method in interface org.cdlib.mrt.core.ManifestRowInf: Return the checkm headers
getHeaders(String) - Method in class org.cdlib.mrt.core.ManifestRowCheckmAbs
getHeaders(String[], String[]) - Static method in class org.cdlib.mrt.core.ManifestRowCheckmAbs
getHeaders(String, String[], String[]) - Static method in class org.cdlib.mrt.core.ManifestRowCheckmAbs
getHttpClient(int) - Static method in class org.cdlib.mrt.utility.HTTPUtil
getHttpClient(String, int) - Static method in class org.cdlib.mrt.utility.HTTPUtil
getHttpGet(URL, File, long, int, LoggerInf) - Static method in class org.cdlib.mrt.utility.HttpGet
getHttpResponse() - Method in enum org.cdlib.mrt.utility.TExceptionEnum
getHttpResponse(String, int) - Static method in class org.cdlib.mrt.utility.HTTPUtil: Perform a GET operation
getHttpResponse(String, int, long, long) - Static method in class org.cdlib.mrt.utility.HTTPUtil: Perform a GET operation
getHttpResponse(URL, int, int) - Static method in class org.cdlib.mrt.utility.HTTPUtil
getHTTPResponse() - Method in exception org.cdlib.mrt.utility.TException: return the status description
getHTTPResponse() - Method in exception org.cdlib.mrt.utility.TRuntimeException: return the status description
getHttpServletRequest() - Method in class org.cdlib.mrt.utility.TFrame: return servlet requeest
getIdentifier() - Method in class org.cdlib.mrt.core.FileComponent: Name of file including relative path values
getIDName() - Method in class org.cdlib.mrt.formatter.XMLMapper: Get name of ID used for this namespace
getIngestStatus(HttpResponse) - Method in class org.cdlib.mrt.tools.loader.BatchLoader
getInputSize() - Method in class org.cdlib.mrt.utility.Checksums
getInputSize() - Method in class org.cdlib.mrt.utility.MessageDigestValue: return match file size
getInputStream() - Method in class org.cdlib.mrt.core.FileContent
getInputStream() - Method in interface org.cdlib.mrt.core.FileContentInf: Get InputStream for returned file
getInt(Properties, String) - Static method in class org.cdlib.mrt.utility.PropertiesUtil: return an int value from a properties
getInteger(String, String) - Static method in class org.cdlib.mrt.core.ValidateStorageCmdParms: Convert String to numeric and throw exception if invalid
getIntProp(String, int) - Method in class org.cdlib.mrt.utility.ListProcessorSimple: Return int value based on m_clientProperties Properties
getIntProp(String, int) - Method in class org.cdlib.mrt.utility.ListProcessorThreads: Return int value based on m_clientProperties Properties
getIsoDate() - Method in class org.cdlib.mrt.core.DateState: Return date in Iso format
getIsoDate(Date) - Static method in class org.cdlib.mrt.utility.DateUtil: Build an IsoDate from a passed Date
getIsoDateFromString(String) - Static method in class org.cdlib.mrt.utility.DateUtil: Build Date from a displayed IsoDate string
getIsoDateFromZString(String) - Static method in class org.cdlib.mrt.utility.DateUtil: Build Date from a displayed IsoDate string
getIsoZDate() - Method in class org.cdlib.mrt.core.DateState: Return date in Iso format - Zulu
getIsoZDate(Date) - Static method in class org.cdlib.mrt.utility.DateUtil: Build an IsoDate from a passed Date
getJavaAlgorithm() - Method in class org.cdlib.mrt.core.MessageDigest: Return checksum type as used by Java
getJavaAlgorithm() - Method in enum org.cdlib.mrt.utility.MessageDigestType
getJson() - Method in class org.cdlib.mrt.tools.YamlParser
getJsonArrayForKey(String) - Method in class org.cdlib.mrt.tools.YamlParser
getJsonForKey(String) - Method in class org.cdlib.mrt.tools.YamlParser
getJSONFormatter(String, LoggerInf) - Static method in class org.cdlib.mrt.formatter.FormatterAbs: get JSON formatter
getJSONFormatter(LoggerInf) - Static method in class org.cdlib.mrt.formatter.FormatterAbs: get JSON formatter
getKey() - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
getKey() - Method in enum org.cdlib.mrt.core.Checkm.ColMap
getKey() - Method in class org.cdlib.mrt.log.utility.AddStateEntry
getKey() - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
getKey() - Method in class org.cdlib.mrt.utility.TimerUtil.Stat
getKey(String) - Method in class org.cdlib.mrt.tools.DefaultConfigResolver
getKeySet() - Method in class org.cdlib.mrt.cloud.CloudProperties
getLastAddVersion() - Method in class org.cdlib.mrt.cloud.VersionMap
getLastDeleteObject() - Method in class org.cdlib.mrt.cloud.VersionMap
getLastDeleteVersion() - Method in class org.cdlib.mrt.cloud.VersionMap
getLastModified() - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
getLastUse() - Method in class org.cdlib.mrt.utility.MrtConnection
getLevel() - Method in enum org.cdlib.mrt.utility.LoggerInf.LogLevel
getLine() - Method in class org.cdlib.mrt.core.ManifestRowCheckmAbs
getLine() - Method in interface org.cdlib.mrt.core.ManifestRowInf: Build a Manifest line for output to a manifest file
getLine(FileComponent) - Method in class org.cdlib.mrt.core.Checkm: Build output manifest line from fileComponent
getLineNumber() - Method in exception org.cdlib.mrt.utility.TException: program code line number for this exception
getLineNumber() - Method in exception org.cdlib.mrt.utility.TRuntimeException: program code line number for this exception
getLinesFromFile(File) - Static method in class org.cdlib.mrt.test.TestFileUtil: Return array of nonempty lines from a file
getLinesFromFile(File) - Static method in class org.cdlib.mrt.utility.FileUtil: Return array of nonempty lines from a file
getLinesFromURL(LoggerInf, String) - Static method in class org.cdlib.mrt.test.TestFileUtil: Return array of nonempty lines from url content
getLinesFromURL(LoggerInf, String) - Static method in class org.cdlib.mrt.utility.FileUtil: Return array of nonempty lines from url content
getList() - Method in class org.cdlib.mrt.cloud.CloudList
getLocalID() - Method in class org.cdlib.mrt.core.FileComponent: get LocalID value
getLocalids() - Method in class org.cdlib.mrt.log.utility.AddStateEntry
getLocalids() - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
getLocalProfile() - Method in class org.cdlib.mrt.core.Checkm
getLocalProperties() - Method in class org.cdlib.mrt.core.PingState: Get locally set property values
getLocalStatistics() - Method in class org.cdlib.mrt.core.PingState: Get locally set statistic values in Tally
getLocation() - Method in exception org.cdlib.mrt.utility.TException: location of exception
getLocation() - Method in exception org.cdlib.mrt.utility.TRuntimeException: location of exception
getLockContent() - Method in class org.cdlib.mrt.utility.TLockFile: get lock info for this object
getLockFile() - Method in class org.cdlib.mrt.utility.TLockFile: get this lock file object
getLockFile(File, String) - Method in class org.cdlib.mrt.utility.TLockFile: get requested lock file
getLogger() - Method in class org.cdlib.mrt.cloud.VersionMap
getLogger() - Method in class org.cdlib.mrt.utility.TFrame: Returns the current logger
getLogger() - Method in class org.cdlib.mrt.utility.TFrameInit: return logger
getLOGGER() - Static method in class org.cdlib.mrt.log.utility.AddStateEntry
getLOGGER() - Static method in class org.cdlib.mrt.log.utility.AddStateEntryGen
getLoggerResource(String) - Static method in class org.cdlib.mrt.log.utility.Log4j2Util
getLogLevelValue(LoggerInf.LogLevel) - Method in class org.cdlib.mrt.utility.TFileLogger
getManifest(LoggerInf, String, ManifestRowAbs.ManifestType) - Static method in class org.cdlib.mrt.core.Manifest: Manifest Factory
getManifest(LoggerInf, ManifestRowAbs.ManifestType) - Static method in class org.cdlib.mrt.core.Manifest: Manifest Factory
getManifestRow() - Method in class org.cdlib.mrt.core.ManifestRowAdd
getManifestRow() - Method in class org.cdlib.mrt.core.ManifestRowBatch
getManifestRow() - Method in class org.cdlib.mrt.core.ManifestRowCheckmAbs
getManifestRow() - Method in class org.cdlib.mrt.core.ManifestRowIngest
getManifestRow() - Method in class org.cdlib.mrt.core.ManifestRowObject
getManifestRow(String) - Method in class org.cdlib.mrt.core.ManifestRowCheckmAbs
getManifestRow(String) - Method in interface org.cdlib.mrt.core.ManifestRowInf: Get ManifestRow object based on passed line
getManifestRow(ManifestRowAbs.ManifestType, String, LoggerInf) - Static method in class org.cdlib.mrt.core.ManifestRowAbs: Based on ManifestRow type return requested ManifestRow handler
getManifestRow(ManifestRowAbs.ManifestType, LoggerInf) - Static method in class org.cdlib.mrt.core.ManifestRowAbs: Based on ManifestRow type return requested ManifestRow handler
getManifestSize(ManInfo) - Method in class org.cdlib.mrt.cloud.VersionMap
getManInfo(int) - Method in class org.cdlib.mrt.cloud.VersionMap
getMap() - Method in class org.cdlib.mrt.cloud.VersionData
getMap(String) - Static method in class org.cdlib.mrt.cloud.VersionMapUtil: Get version map from manifext URL
getMapList() - Method in class org.cdlib.mrt.formatter.NSMap
getMaxMemory() - Method in class org.cdlib.mrt.core.PingState
getMaxVersion() - Method in class org.cdlib.mrt.cloud.VersionMap
getMediaType(File) - Method in class org.cdlib.mrt.core.Tika: Return MediaType just using File
getMediaType(InputStream, String) - Method in class org.cdlib.mrt.core.Tika: Returns a tika Media based on the input stream and file Extension
getMergeComponents(List<FileComponent>, List<FileComponent>, String[]) - Static method in class org.cdlib.mrt.cloud.VersionMap
getMergeInfo(ManInfo, String[]) - Method in class org.cdlib.mrt.cloud.VersionMap
getMergeInfoOriginal(ManInfo, String[]) - Method in class org.cdlib.mrt.cloud.VersionMap
getMessageDigest() - Method in class org.cdlib.mrt.core.FileComponent: Return the first Message digest in digest set Typically there will only be one as saved in manifest
getMessageDigest(String) - Method in class org.cdlib.mrt.core.FileComponent: Return a specific digest based on algorithm e.g.
getMessageDigest(MessageDigestType) - Method in class org.cdlib.mrt.core.FileComponent: Return a specific digest based on an algorithm enum
getMessageDigests() - Method in class org.cdlib.mrt.core.FileComponent: set of MessageDigest - each containing a unique MessageDigest type (e.g.
getMessageMaxLevel() - Method in interface org.cdlib.mrt.utility.LoggerInf: get threshold for message creation
getMessageMaxLevel() - Method in class org.cdlib.mrt.utility.TFileLogger: get threshold for message creation
getMetaKey(String) - Static method in class org.cdlib.mrt.cloud.CloudProperties
getMethodName() - Method in exception org.cdlib.mrt.utility.TException: Return name of method where exception occurred
getMethodName() - Method in exception org.cdlib.mrt.utility.TRuntimeException: Return name of method where exception occurred
getMethodName(Method) - Method in class org.cdlib.mrt.formatter.FormatterAbs: Standard name generator for elements.
getMetsDC(LinkedHashList<String, String>, Document, LoggerInf) - Static method in class org.cdlib.mrt.core.DC: Extract DC from METS
getMetsDC(LinkedHashList<String, String>, NodeList, LoggerInf) - Static method in class org.cdlib.mrt.core.DC: Extract DC from METS
getMetsMods(Document, LoggerInf) - Static method in class org.cdlib.mrt.core.DC: Create a MODS xml extracting from METS
getMFrameID() - Method in class org.cdlib.mrt.utility.TFrame: Returns the service identifier
getMimeType() - Method in class org.cdlib.mrt.core.FileComponent: File Mime type
getMimeType() - Method in enum org.cdlib.mrt.formatter.FormatInfo: return MIME type of this format response
getMimeType() - Method in enum org.cdlib.mrt.formatter.FormatType: return MIME type of this format response
getMimeType() - Method in enum org.cdlib.mrt.utility.ArchiveBuilder.ArchiveType
getMimeType() - Method in enum org.cdlib.mrt.utility.ArchiveBuilderBase.ArchiveType
getMimeType(File) - Method in class org.cdlib.mrt.core.Tika: Get mime type using just a File
getMimeType(InputStream, String) - Method in class org.cdlib.mrt.core.Tika
getMrtConnectionPool(String, String, String) - Static method in class org.cdlib.mrt.utility.MrtConnectionPool
getName() - Method in enum org.cdlib.mrt.core.Checkm.ColMap
getName() - Method in enum org.cdlib.mrt.core.StorageTypesEnum: return the description of the storage
getName() - Method in class org.cdlib.mrt.tools.loader.BatchLoader: Name of EnrichmentList
getName() - Method in class org.cdlib.mrt.tools.loader.StoreLoader: Name of EnrichmentList
getName() - Method in interface org.cdlib.mrt.utility.ListProcessor: Name of EnrichmentList
getName() - Method in class org.cdlib.mrt.utility.ListProcessorSimple: Name of EnrichmentList
getName() - Method in class org.cdlib.mrt.utility.ListProcessorThreads: Name of EnrichmentList
getName(String) - Method in class org.cdlib.mrt.formatter.XMLMapper: Get this name with namespace if supplied.
getNames(String, String, String) - Method in class org.cdlib.mrt.security.CertsLDAP
getNamespace() - Method in class org.cdlib.mrt.core.Identifier: Return identifier type
getNameSpacePrefix() - Method in class org.cdlib.mrt.formatter.XMLMapper
getNameSpaceURI() - Method in class org.cdlib.mrt.formatter.XMLMapper
getNextVersion() - Method in class org.cdlib.mrt.cloud.VersionMap
getNode() - Method in class org.cdlib.mrt.cloud.VersionData
getNode() - Method in class org.cdlib.mrt.cloud.VersionMap
getNodeList(Node, String, LoggerInf) - Static method in class org.cdlib.mrt.utility.DOMParser: Same as above, fewer parameters Logging routine not added since the original code for this method did no have a "throw" in the catch (TransformerException te) which indicates that it may not be worth logging.
getNow() - Method in class org.cdlib.mrt.utility.TFileLogger: Return a string representation of the current date, for use in qualifying the log file name.
getNS() - Method in enum org.cdlib.mrt.core.DataciteConvert.StyleEnum: Return the storage ns
getNumLong(Properties, String) - Static method in class org.cdlib.mrt.utility.GetProp
getNumLongEx(Properties, String) - Static method in class org.cdlib.mrt.utility.GetProp
getOAIDC(LinkedHashList<String, String>, String, LoggerInf) - Static method in class org.cdlib.mrt.core.DC: From a string DC build list of DC values
getObject(String, int) - Static method in class org.cdlib.mrt.utility.HTTPUtil: Send this manifestFile to mrt store
getObject(String, int, int) - Static method in class org.cdlib.mrt.utility.HTTPUtil: getObject with timeout and retry
getObject404(String, int, int) - Static method in class org.cdlib.mrt.utility.HTTPUtil: getObject with timeout and retry
getObjectEntity(String, int) - Static method in class org.cdlib.mrt.utility.HTTPUtil: Send this manifestFile to mrt store
getObjectEntity(String, int, long, long) - Static method in class org.cdlib.mrt.utility.HTTPUtil: Send this manifestFile to mrt store
getObjectID() - Method in class org.cdlib.mrt.cloud.VersionData
getObjectID() - Method in class org.cdlib.mrt.cloud.VersionMap
getObjectID() - Method in class org.cdlib.mrt.core.ComponentContent
getObjectID() - Method in class org.cdlib.mrt.log.utility.AddStateEntry
getObjectID() - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
getObjectName(Object) - Method in class org.cdlib.mrt.formatter.FormatterAbs: From a full object name find the last suffix
getObjectProperties(String, int, int) - Static method in class org.cdlib.mrt.utility.HTTPUtil: Get structured properties from a Get request
getObjectResponse(String, int, int) - Static method in class org.cdlib.mrt.utility.HTTPUtil: Get structured properties from a Get request
getOriginalActualCount() - Method in class org.cdlib.mrt.cloud.VersionMap
getOriginalActualSize() - Method in class org.cdlib.mrt.cloud.VersionMap
getOriginalFileCount() - Method in class org.cdlib.mrt.cloud.VersionMap
getOriginalLastAddVersion() - Method in class org.cdlib.mrt.cloud.VersionMap
getOriginalLastDeleteVersion() - Method in class org.cdlib.mrt.cloud.VersionMap
getOriginalTotalSize() - Method in class org.cdlib.mrt.cloud.VersionMap
getOriginalVersionCnt() - Method in class org.cdlib.mrt.cloud.VersionMap
getOutputBatchFile() - Method in class org.cdlib.mrt.tools.loader.BatchManifest
getOutputFile(File, String) - Static method in class org.cdlib.mrt.cloud.VersionMapUtil
getOutputHeaders() - Method in class org.cdlib.mrt.core.ManifestRowCheckmAbs
getOutputHeaders() - Method in interface org.cdlib.mrt.core.ManifestRowInf: Return the checkm headers
getOwnerID() - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
getPairDirectory(File, String) - Static method in class org.cdlib.mrt.utility.PairtreeUtil: Return a file that may not be resolved for pair path
getPairLevels(String) - Static method in class org.cdlib.mrt.utility.PairtreeUtil: Get a List of String pairtree elements
getPairName(String) - Static method in class org.cdlib.mrt.utility.PairtreeUtil: Get a pairtree path based on input name
getPairPath(File, Vector<String>) - Static method in class org.cdlib.mrt.utility.PairtreeUtil: Build if necessary directories down to object level
getParsedValues() - Method in class org.cdlib.mrt.tools.YamlParser
getPattern(String) - Method in class org.cdlib.mrt.utility.RegexPatternCache: look up regular expression pattern in cache - if not found create new pattern, save pattern in cache, and return new compiled pattern
getPattern(String, int) - Method in class org.cdlib.mrt.utility.RegexPatternCache: look up regular expression pattern in cache - if not found create new pattern, save pattern in cache, and return new compiled pattern
getPeakThreadCnt() - Method in class org.cdlib.mrt.core.PingState
getPostManifest(String, File, File) - Static method in class org.cdlib.mrt.core.ManifestBuild: Build a POST manifest
getPostManifest(String, File, File, LoggerInf) - Static method in class org.cdlib.mrt.core.ManifestBuild: Build a POST manifest
getPrefix(String) - Static method in class org.cdlib.mrt.core.Checkm
getPrefix(String) - Static method in enum org.cdlib.mrt.core.Checkm.Prefix
getPrettyJson() - Method in class org.cdlib.mrt.tools.YamlParser
getPrimaryID() - Method in class org.cdlib.mrt.core.FileComponent: get primaryID value
getProcessNode() - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
getProcessStatus() - Method in class org.cdlib.mrt.utility.TimerUtil
getProfile() - Method in class org.cdlib.mrt.core.ManifestRowCheckmAbs
getProfile() - Method in interface org.cdlib.mrt.core.ManifestRowInf: If profile associated with this manifest then return value
getProfile(String) - Static method in class org.cdlib.mrt.core.Checkm
getProfile(String, String, String) - Method in class org.cdlib.mrt.security.CertsLDAP
getProfile(String, String, String, String) - Static method in class org.cdlib.mrt.security.LDAPUtil
getProfileName(String) - Static method in class org.cdlib.mrt.security.LDAPUtil
getProfiles() - Method in class org.cdlib.mrt.core.ManifestRowAdd
getProfiles() - Method in class org.cdlib.mrt.core.ManifestRowBatch
getProfiles() - Method in class org.cdlib.mrt.core.ManifestRowCheckmAbs
getProfiles() - Method in class org.cdlib.mrt.core.ManifestRowIngest
getProfiles() - Method in class org.cdlib.mrt.core.ManifestRowObject
getProp() - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
GetProp - Class in org.cdlib.mrt.utility: Properties utility methods
GetProp() - Constructor for class org.cdlib.mrt.utility.GetProp
getProperties() - Method in class org.cdlib.mrt.cloud.CloudProperties
getProperties() - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
getProperties() - Method in class org.cdlib.mrt.utility.MProperties
getProperties() - Method in class org.cdlib.mrt.utility.TFrame: Return a deep clone of framework properties
getProperties(String) - Method in class org.cdlib.mrt.formatter.XMLMapper: Gets a resource using the class loader
getProperty(String) - Method in class org.cdlib.mrt.cloud.CloudProperties
getProperty(String) - Method in class org.cdlib.mrt.utility.MProperties
getProperty(String) - Method in class org.cdlib.mrt.utility.TFrame: Gets a framework property
getProperty(String, String) - Method in class org.cdlib.mrt.utility.MProperties
getProperty(String, String) - Method in class org.cdlib.mrt.utility.TFrame
getQuery(String) - Static method in class org.cdlib.mrt.utility.HTTPUtil
getRegistry(String, String) - Method in class org.cdlib.mrt.utility.TFrame: Returns a generic handler for a specified type of service.
getRemoteException() - Method in exception org.cdlib.mrt.utility.TException: Return any remote exception stored as part of creating TException
getRemoteException() - Method in exception org.cdlib.mrt.utility.TRuntimeException: Return any remote exception stored as part of creating TException
getReplaceStaleTLockFile(File, String, int) - Static method in class org.cdlib.mrt.utility.TLockFile: Factory method - will replace lock if exceeds stale age
getReplaceTLockFile(File, String, int, int, int, int) - Static method in class org.cdlib.mrt.utility.TLockFile: Factory method - will replace lock if exceeds certain age if does not exceed age then it attempts to build lock
getResolvedStorageNode(long) - Method in class org.cdlib.mrt.tools.DefaultConfigResolver
getResolvedStorageNode(long) - Method in interface org.cdlib.mrt.tools.UC3ConfigResolver
getResolvedValue(String) - Method in class org.cdlib.mrt.tools.DefaultConfigResolver
getResolvedValue(String) - Method in class org.cdlib.mrt.tools.MockConfigResolver
getResolvedValue(String) - Method in class org.cdlib.mrt.tools.SSMConfigResolver
getResolvedValue(String) - Method in interface org.cdlib.mrt.tools.UC3ConfigResolver
getResolvedValues() - Method in class org.cdlib.mrt.tools.YamlParser
getResource(String) - Method in class org.cdlib.mrt.utility.TFrame: Gets a resource using the class loader
getResourceName() - Method in enum org.cdlib.mrt.core.DataciteConvert.StyleEnum: return the description of the storage
getResourceName() - Method in class org.cdlib.mrt.formatter.NSMap
getResourceName() - Method in class org.cdlib.mrt.formatter.XMLMapper: Get name of ID used for this namespace
getResult() - Method in class org.cdlib.mrt.utility.MessageDigestValue
getResult(ResultSet, LoggerInf) - Static method in class org.cdlib.mrt.utility.SQLUtil: Return a row from a table
getRootLevel() - Static method in class org.cdlib.mrt.log.utility.Log4j2Util
getRows(File) - Method in class org.cdlib.mrt.core.Manifest: Enumeration handling
getRows(InputStream) - Method in class org.cdlib.mrt.core.Manifest: Enumeration handling
getSaveComments() - Method in class org.cdlib.mrt.core.Checkm
getSchema() - Method in enum org.cdlib.mrt.core.DataciteConvert.StyleEnum: Return DataCite schema
getSelectResults(ResultSet) - Static method in class org.cdlib.mrt.utility.SQLUtil: get a list from elements in list
getSemanticBase() - Method in class org.cdlib.mrt.formatter.XMLMapper
getSerializeObject(String) - Static method in class org.cdlib.mrt.utility.SerializeUtil: build Serializable object from a remote service using a request URL
getService() - Method in class org.cdlib.mrt.log.utility.AddStateEntry
getService() - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
getServiceException() - Method in class org.cdlib.mrt.tools.SSMConfigResolver
getServiceName() - Method in class org.cdlib.mrt.core.PingState
getServiceProcess() - Method in class org.cdlib.mrt.log.utility.AddStateEntry
getServiceProcess() - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
getSimpleElementText(Node, LoggerInf) - Static method in class org.cdlib.mrt.utility.DOMParser: Return concatinated string text values for all text nodes that are children of this node Contains logger
getSingleConnection(boolean) - Method in class org.cdlib.mrt.db.DPRFileDB
getSingleInstance(String) - Method in class org.cdlib.mrt.utility.TFrame: Gets the single instance of a 'singleton' patterned class.
getSingleInstances(String) - Method in class org.cdlib.mrt.utility.TFrame: Gets the single instance of each class associated with a registry key.
getSize() - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
getSize() - Method in class org.cdlib.mrt.core.FileComponent: Size of file in bytes
getSourceNode() - Method in class org.cdlib.mrt.log.utility.AddStateEntry
getSourceNode() - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
getSsmPath() - Method in class org.cdlib.mrt.tools.DefaultConfigResolver
getSsmPath() - Method in interface org.cdlib.mrt.tools.UC3ConfigResolver
getStat(String) - Method in class org.cdlib.mrt.utility.TimerUtil
getStatus() - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
getStatus() - Method in exception org.cdlib.mrt.utility.TException: return the status code
getStatus() - Method in exception org.cdlib.mrt.utility.TRuntimeException: return the status code
getStatus(String, boolean) - Method in class org.cdlib.mrt.utility.TimerUtil
getStatusDescription() - Method in exception org.cdlib.mrt.utility.TException: return the status description
getStatusDescription() - Method in exception org.cdlib.mrt.utility.TRuntimeException: return the status description
getStatusName() - Method in exception org.cdlib.mrt.utility.TException: value of status
getStatusName() - Method in exception org.cdlib.mrt.utility.TRuntimeException: value of status
getStorageBase() - Method in class org.cdlib.mrt.cloud.VersionData
getStorageBase() - Method in class org.cdlib.mrt.cloud.VersionMap
getStorageClass() - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
getStream(URL, int, LoggerInf) - Static method in class org.cdlib.mrt.utility.HttpGet
getStream(URL, long, int, LoggerInf) - Static method in class org.cdlib.mrt.utility.HttpGet
getTallyMap() - Method in class org.cdlib.mrt.utility.TallyTable
getTargetNode() - Method in class org.cdlib.mrt.log.utility.AddStateEntry
getTargetNode() - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
getTempDir(String) - Static method in class org.cdlib.mrt.test.TestFileUtil: Get a temporary directory
getTempDir(String) - Static method in class org.cdlib.mrt.utility.FileUtil: Get a temporary directory
getTempDir(String, LoggerInf) - Static method in class org.cdlib.mrt.test.TestFileUtil: Get a temporary directory
getTempDir(String, LoggerInf) - Static method in class org.cdlib.mrt.utility.FileUtil: Get a temporary directory
getTempFile(String, String) - Static method in class org.cdlib.mrt.test.TestFileUtil: Create a temp file using prefix and suffix (THREAD SAFE)
getTempFile(String, String) - Static method in class org.cdlib.mrt.utility.FileUtil: Create a temp file using prefix and suffix (THREAD SAFE)
getTFileLogger(String, int, int) - Static method in class org.cdlib.mrt.utility.LoggerAbs: Factory class for sysout default using explicit numeric levels
getTFileLogger(String, String, Properties) - Static method in class org.cdlib.mrt.utility.LoggerAbs: Factory class for file output defined by prop values
getTFileLogger(String, LoggerInf.LogLevel, LoggerInf.LogLevel) - Static method in class org.cdlib.mrt.utility.LoggerAbs: Factory class for sysout default using explicit verbose levels
getTFrame() - Method in class org.cdlib.mrt.utility.TFrameInit: Return the TFrame property resolver
getThreadCnt() - Method in class org.cdlib.mrt.core.PingState
getThreadCnt() - Method in class org.cdlib.mrt.core.ThreadHandler
getThreadHandler(long, int, LoggerInf) - Static method in class org.cdlib.mrt.core.ThreadHandler
getTika(LoggerInf) - Static method in class org.cdlib.mrt.core.Tika
getTime() - Method in class org.cdlib.mrt.utility.TallyTable: Add difference in time from arg to now
getTimeLong() - Method in class org.cdlib.mrt.core.DateState: Return second format of this Date
getTimeMil() - Method in class org.cdlib.mrt.utility.TimerUtil.Stat
getTimeoutInputStream(URL, int) - Static method in class org.cdlib.mrt.utility.HTTPUtil: Make a connection using URL and perform timeout test using threads
getTitle() - Method in class org.cdlib.mrt.core.FileComponent
getTLockFile(File, String) - Static method in class org.cdlib.mrt.utility.TLockFile: Factory method
getTLockFile(File, String, int) - Static method in class org.cdlib.mrt.utility.TLockFile: Factory method
getTLockFile(File, String, int, int) - Static method in class org.cdlib.mrt.utility.TLockFile: Factory method - this form allows multiple retry attempts on the lock
getTotalCnt() - Method in class org.cdlib.mrt.cloud.VersionMap
getTotalMemory() - Method in class org.cdlib.mrt.core.PingState
getTotalSize() - Method in class org.cdlib.mrt.cloud.VersionMap
getTotSize() - Method in class org.cdlib.mrt.tools.loader.LoaderManifest
getTrace() - Method in exception org.cdlib.mrt.utility.TException: return the stack trace
getTrace() - Method in exception org.cdlib.mrt.utility.TRuntimeException: return the stack trace
getType() - Method in enum org.cdlib.mrt.core.Checkm.ColMap
getType() - Method in enum org.cdlib.mrt.core.StorageTypesEnum: Return the storage type
getUniqueCnt() - Method in class org.cdlib.mrt.cloud.VersionMap
getUniqueSize() - Method in class org.cdlib.mrt.cloud.VersionMap
getURL() - Method in class org.cdlib.mrt.core.FileComponent: URL reference to file
getURLEncodeFilePath(String) - Static method in class org.cdlib.mrt.test.TestFileUtil: Build a URL equivalent path using a java file path This routine maintains all slashes in the file path as a slash in the URL.
getURLEncodeFilePath(String) - Static method in class org.cdlib.mrt.utility.FileUtil: Build a URL equivalent path using a java file path This routine maintains all slashes in the file path as a slash in the URL.
getURLNorm() - Method in class org.cdlib.mrt.core.FileComponent
getUserProperties(String, String, String) - Static method in class org.cdlib.mrt.security.LDAPUtil
getUTF8(byte[]) - Static method in class org.cdlib.mrt.utility.StringUtil
getVal(Checkm.ColMap, String[]) - Method in class org.cdlib.mrt.core.Checkm: Get content for this column
getValNoDec(Checkm.ColMap, String[]) - Method in class org.cdlib.mrt.core.Checkm: Get value of column without decoding
getValue() - Method in class org.cdlib.mrt.core.Identifier: Return identifier value
getValue() - Method in class org.cdlib.mrt.core.MessageDigest: Return checksum value
getValue(String) - Method in class org.cdlib.mrt.utility.TallyTable
getValueOrDefault(String, String) - Method in class org.cdlib.mrt.tools.DefaultConfigResolver
getVersion() - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
getVersion() - Method in enum org.cdlib.mrt.core.DataciteConvert.StyleEnum: return DataCite version
getVersion() - Method in class org.cdlib.mrt.log.utility.AddStateEntry
getVersion() - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
getVersion() - Method in enum org.cdlib.mrt.utility.LoggerInf.LogLevel
getVersion(VersionMap, int) - Static method in class org.cdlib.mrt.cloud.VersionMapUtil: Get component information from version map
getVersionComponents(int) - Method in class org.cdlib.mrt.cloud.VersionMap
getVersionContent(int) - Method in class org.cdlib.mrt.cloud.VersionMap
getVersionCount() - Method in class org.cdlib.mrt.cloud.VersionMap
getVersionFiles(VersionMap, int, String, File) - Static method in class org.cdlib.mrt.cloud.VersionMapUtil: Fill in the outputDir file directory with the content from this version
getVersionID() - Method in class org.cdlib.mrt.core.ComponentContent
getVersionInfo(int) - Method in class org.cdlib.mrt.cloud.VersionMap
getVersionListInx(int) - Method in class org.cdlib.mrt.cloud.VersionMap
getVersionMap() - Method in class org.cdlib.mrt.cloud.ManifestSAX
getVersionMap(String) - Static method in class org.cdlib.mrt.cloud.VersionMap: Get version map from manifext URL
getVersions() - Method in class org.cdlib.mrt.log.utility.AddStateEntry
getVersions() - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
getVersionStats(int) - Method in class org.cdlib.mrt.cloud.VersionMap
getXalanTransformer() - Static method in class org.cdlib.mrt.utility.DOMParser
getXHTML() - Method in class org.cdlib.mrt.formatter.XMLMapper
getXHTMLFormatter(String, LoggerInf) - Static method in class org.cdlib.mrt.formatter.FormatterAbs: get XHTML formatter
getXHTMLFormatter(LoggerInf) - Static method in class org.cdlib.mrt.formatter.FormatterAbs: get XHTML formatter
getXMLFormatter(String, LoggerInf) - Static method in class org.cdlib.mrt.formatter.FormatterAbs: get XML formatter
getXMLFormatter(LoggerInf) - Static method in class org.cdlib.mrt.formatter.FormatterAbs: get XML formatter
getXMLMapper(String, StateInf) - Static method in class org.cdlib.mrt.formatter.XMLMapper
getZipEntry(File) - Method in class org.cdlib.mrt.utility.ArchiveBuilderBase.Zip
globalNameSpace - Variable in class org.cdlib.mrt.formatter.XMLMapper
GZIP - Static variable in class org.cdlib.mrt.security.Base64: Specify that data should be gzip-compressed.

H

Handle - Enum constant in enum org.cdlib.mrt.core.Identifier.Namespace
handleEOF(String) - Method in class org.cdlib.mrt.core.Checkm: Raise error if #%eof not found as last entry in manifest
handleEOF(String) - Method in class org.cdlib.mrt.core.ManifestRowCheckmAbs
handleEOF(String) - Method in interface org.cdlib.mrt.core.ManifestRowInf: Any specialized EOF handling required.
handleHeaders(String[]) - Method in class org.cdlib.mrt.core.ManifestRowCheckmAbs
handleHeaders(String[]) - Method in interface org.cdlib.mrt.core.ManifestRowInf: Process all manifest headers beginning with the form #% The headers exist before any processed manifest line
handleHeaders(String[], String[]) - Method in class org.cdlib.mrt.core.Checkm: Validate Profile from external manifest headers
hash - Variable in class org.cdlib.mrt.utility.LinkedHashList
hashAlgorithm - Enum constant in enum org.cdlib.mrt.core.Checkm.ColMap
hashValue - Enum constant in enum org.cdlib.mrt.core.Checkm.ColMap
hasMoreElements() - Method in class org.cdlib.mrt.core.Manifest: More manifest lines to be processed
hex(int) - Static method in class org.cdlib.mrt.utility.PairtreeUtil
hostName - Variable in class org.cdlib.mrt.security.CertsLDAP
html - Enum constant in enum org.cdlib.mrt.formatter.FormatterInf.Format
HttpGet - Class in org.cdlib.mrt.utility
HttpGet(URL, File, long, int, LoggerInf) - Constructor for class org.cdlib.mrt.utility.HttpGet
httpResponse - Variable in enum org.cdlib.mrt.utility.TExceptionEnum
HTTPUtil - Class in org.cdlib.mrt.utility: This class will contain utilities for HTTP transactions
HTTPUtil() - Constructor for class org.cdlib.mrt.utility.HTTPUtil

I

id - Variable in class org.cdlib.mrt.formatter.NSMap.NSEntry
identifier - Variable in class org.cdlib.mrt.core.FileComponent
Identifier - Class in org.cdlib.mrt.core: General digital identifier
Identifier(String) - Constructor for class org.cdlib.mrt.core.Identifier: Constructor - Namespace default is ARK
Identifier(String, Identifier.Namespace) - Constructor for class org.cdlib.mrt.core.Identifier: Constructor
Identifier.Namespace - Enum in org.cdlib.mrt.core: Supported Identifier types
ImportCert - Class in org.cdlib.mrt.security
ImportCert() - Constructor for class org.cdlib.mrt.security.ImportCert
incFile(File, int) - Static method in class org.cdlib.mrt.test.TestFileUtil: Increment a stored file value and save back to file
incFile(File, int) - Static method in class org.cdlib.mrt.utility.FileUtil: Increment a stored file value and save back to file
includeBase - Variable in class org.cdlib.mrt.utility.ArchiveBuilderBase
includeThreadName - Variable in class org.cdlib.mrt.utility.TFileLogger
INFO - Enum constant in enum org.cdlib.mrt.utility.LoggerInf.LogLevel
ingest - Enum constant in enum org.cdlib.mrt.core.ManifestRowAbs.ManifestType
ingestBase - Variable in class org.cdlib.mrt.tools.loader.BatchLoader
initialize(Object) - Method in class org.cdlib.mrt.utility.TFrame: If object implements MFrameComponent, initialize it.
initialize(String) - Method in class org.cdlib.mrt.utility.TFileLogger: Initialize the logger with no framework present.
initialize(String, String, Properties) - Method in class org.cdlib.mrt.utility.TFileLogger: Initialize the logger inside of a framework.
initialize(TFrame) - Method in class org.cdlib.mrt.core.ManifestBuild
initialize(TFrame) - Method in class org.cdlib.mrt.tools.loader.BatchLoader
initialize(TFrame) - Method in class org.cdlib.mrt.tools.loader.StoreLoader
initialize(TFrame) - Method in class org.cdlib.mrt.utility.ListProcessorSimple
initialize(TFrame) - Method in interface org.cdlib.mrt.utility.TFrameComponent
initializeBatchLoader() - Method in class org.cdlib.mrt.tools.loader.BatchLoader
initializeProperties - Variable in class org.cdlib.mrt.utility.TFileLogger
initializeStoreLoader() - Method in class org.cdlib.mrt.tools.loader.StoreLoader
initialThreads() - Method in class org.cdlib.mrt.core.ThreadHandler
inLogBR - Variable in class org.cdlib.mrt.utility.TimerUtil
inLogFile - Variable in class org.cdlib.mrt.utility.TimerUtil
inputSize - Variable in class org.cdlib.mrt.utility.Checksums.Digest
inputSize - Variable in class org.cdlib.mrt.utility.Checksums
inputSize - Variable in class org.cdlib.mrt.utility.MessageDigestValue
inputSize - Variable in class org.cdlib.mrt.utility.MessageDigestValue.Result
inputStream - Variable in class org.cdlib.mrt.core.FileContent
InputStream(InputStream) - Constructor for class org.cdlib.mrt.security.Base64.InputStream: Constructs a Base64.InputStream in DECODE mode.
InputStream(InputStream, int) - Constructor for class org.cdlib.mrt.security.Base64.InputStream: Constructs a Base64.InputStream in either ENCODE or DECODE mode.
install(String, String, String, File) - Static method in class org.cdlib.mrt.security.ImportCert
install(String, String, String, File) - Static method in class org.cdlib.mrt.security.InstallCert
InstallCert - Class in org.cdlib.mrt.security
InstallCert() - Constructor for class org.cdlib.mrt.security.InstallCert
instantiate(String) - Method in class org.cdlib.mrt.utility.TFrame: Creates an instance of a registered class.
instantiateAll(String) - Method in class org.cdlib.mrt.utility.TFrame: Creates instances of all registered classes sharing a common registry key
instantiateTFrame(String[], String) - Method in class org.cdlib.mrt.utility.TFrameInit: Instantiat TFrame object
interfaceMatches(Class, String) - Method in class org.cdlib.mrt.formatter.FormatterAbs: Test if a class has a hierarchical interface of a particular type
intProp(Properties, String) - Static method in class org.cdlib.mrt.utility.PropertiesUtil: return an int value from a properties
inUse() - Method in class org.cdlib.mrt.utility.MrtConnection
INVALID_ARCHITECTURE - Enum constant in enum org.cdlib.mrt.utility.TExceptionEnum
INVALID_ARCHITECTURE(Exception) - Constructor for exception org.cdlib.mrt.utility.TException.INVALID_ARCHITECTURE
INVALID_ARCHITECTURE(Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.INVALID_ARCHITECTURE
INVALID_ARCHITECTURE(String) - Constructor for exception org.cdlib.mrt.utility.TException.INVALID_ARCHITECTURE
INVALID_ARCHITECTURE(String) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.INVALID_ARCHITECTURE
INVALID_ARCHITECTURE(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TException.INVALID_ARCHITECTURE
INVALID_ARCHITECTURE(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.INVALID_ARCHITECTURE
INVALID_CONFIGURATION - Enum constant in enum org.cdlib.mrt.utility.TExceptionEnum
INVALID_CONFIGURATION(Exception) - Constructor for exception org.cdlib.mrt.utility.TException.INVALID_CONFIGURATION
INVALID_CONFIGURATION(Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.INVALID_CONFIGURATION
INVALID_CONFIGURATION(String) - Constructor for exception org.cdlib.mrt.utility.TException.INVALID_CONFIGURATION
INVALID_CONFIGURATION(String) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.INVALID_CONFIGURATION
INVALID_CONFIGURATION(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TException.INVALID_CONFIGURATION
INVALID_CONFIGURATION(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.INVALID_CONFIGURATION
INVALID_DATA_FORMAT - Enum constant in enum org.cdlib.mrt.utility.TExceptionEnum
INVALID_DATA_FORMAT(Exception) - Constructor for exception org.cdlib.mrt.utility.TException.INVALID_DATA_FORMAT
INVALID_DATA_FORMAT(Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.INVALID_DATA_FORMAT
INVALID_DATA_FORMAT(String) - Constructor for exception org.cdlib.mrt.utility.TException.INVALID_DATA_FORMAT
INVALID_DATA_FORMAT(String) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.INVALID_DATA_FORMAT
INVALID_DATA_FORMAT(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TException.INVALID_DATA_FORMAT
INVALID_DATA_FORMAT(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.INVALID_DATA_FORMAT
INVALID_OR_MISSING_PARM - Enum constant in enum org.cdlib.mrt.utility.TExceptionEnum
INVALID_OR_MISSING_PARM(Exception) - Constructor for exception org.cdlib.mrt.utility.TException.INVALID_OR_MISSING_PARM
INVALID_OR_MISSING_PARM(Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.INVALID_OR_MISSING_PARM
INVALID_OR_MISSING_PARM(String) - Constructor for exception org.cdlib.mrt.utility.TException.INVALID_OR_MISSING_PARM
INVALID_OR_MISSING_PARM(String) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.INVALID_OR_MISSING_PARM
INVALID_OR_MISSING_PARM(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TException.INVALID_OR_MISSING_PARM
INVALID_OR_MISSING_PARM(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.INVALID_OR_MISSING_PARM
isActiveLock() - Method in class org.cdlib.mrt.utility.TLockFile: status of lock
isAllBlank(String) - Static method in class org.cdlib.mrt.utility.StringUtil: Return true if only space characters are found or empty
isAuthorized(String, String, String, String) - Method in class org.cdlib.mrt.security.CertsLDAP
isAuthorized(String, String, String, String) - Static method in class org.cdlib.mrt.security.LDAPUtil
isAuthorized(String, String, String, String, String) - Static method in class org.cdlib.mrt.security.LDAPUtil
isDC(Element, LoggerInf) - Static method in class org.cdlib.mrt.core.DC
isDebug() - Static method in class org.cdlib.mrt.core.ThreadHandler
isDeleteFileAfterCopy() - Method in class org.cdlib.mrt.utility.ArchiveBuilderBase
isDifferent() - Method in class org.cdlib.mrt.cloud.MatchMap
isDifferentContent() - Method in class org.cdlib.mrt.cloud.MatchMap
isDifferentCurrent() - Method in class org.cdlib.mrt.cloud.MatchMap
isDisplayableClass(Class) - Method in class org.cdlib.mrt.formatter.FormatterAbs
isDisplayMethod(Method) - Method in class org.cdlib.mrt.formatter.FormatterAbs: Critical routine to determine if a method should be displayed Must begin with get.
isEmpty(byte[]) - Static method in class org.cdlib.mrt.utility.StringUtil: test if the byte [] passed is null or empty
isEmpty(String) - Static method in class org.cdlib.mrt.utility.StringUtil: test if the string passed is null or empty
isEmpty(StringBuffer) - Static method in class org.cdlib.mrt.utility.StringUtil: test if the StringBuffer passed is null or empty
isEnum(Class) - Method in class org.cdlib.mrt.formatter.FormatterAbs: /** Is this an enum class?
isErrorLoggable(LoggerInf.LogLevel) - Method in interface org.cdlib.mrt.utility.LoggerInf: is this logLevel high enough to be error logged
isErrorLoggable(LoggerInf.LogLevel) - Method in class org.cdlib.mrt.utility.TFileLogger: is this logLevel high enough to be error logged
isFTP(String) - Static method in class org.cdlib.mrt.utility.HTTPUtil
isLinkedHashList(Class) - Method in class org.cdlib.mrt.formatter.FormatterAbs: Is this a StateStringInf class
isList(Class) - Method in class org.cdlib.mrt.formatter.FormatterAbs: Is this a List class
isMap(Class) - Method in class org.cdlib.mrt.formatter.FormatterAbs: Is this a Map class
isMatch(VersionMap) - Method in class org.cdlib.mrt.cloud.VersionMap
isMatch(FileComponent, FileComponent) - Method in class org.cdlib.mrt.cloud.VersionMap
isMatchComponents(List<FileComponent>, List<FileComponent>) - Method in class org.cdlib.mrt.cloud.VersionMap
isMessageLoggable(LoggerInf.LogLevel) - Method in interface org.cdlib.mrt.utility.LoggerInf: is this logLevel high enough to be message logged
isMessageLoggable(LoggerInf.LogLevel) - Method in class org.cdlib.mrt.utility.TFileLogger: is this logLevel high enough to be message logged
isMissingMap() - Method in class org.cdlib.mrt.cloud.MatchMap
isNotEmpty(byte[]) - Static method in class org.cdlib.mrt.utility.StringUtil: test if the byte [] passed is not null and not empty
isNotEmpty(String) - Static method in class org.cdlib.mrt.utility.StringUtil: test if the string passed is not null and not empty
isNotEmpty(StringBuffer) - Static method in class org.cdlib.mrt.utility.StringUtil: test if the StringBuffer passed is not null and not empty
isNumeric(Class) - Method in class org.cdlib.mrt.formatter.FormatterAbs: Determine if this class is numeric or boolean.
isNumeric(Object) - Method in class org.cdlib.mrt.formatter.FormatterAbs: Determine if this class is numeric or boolean.
isNumeric(String) - Method in class org.cdlib.mrt.formatter.FormatterAbs: Determine if this class is numeric or boolean.
isNumeric(String) - Static method in class org.cdlib.mrt.utility.StringUtil: isNumeric (String) tests if all the characters of a string are digits
ISOPATTERN - Static variable in class org.cdlib.mrt.utility.DateUtil
ISOZPATTERN - Static variable in class org.cdlib.mrt.utility.DateUtil
isShutdown() - Method in class org.cdlib.mrt.core.ThreadHandler
isStateClass(Class) - Method in class org.cdlib.mrt.formatter.FormatterAbs: Is this a StateInf class
isStateStringClass(Class) - Method in class org.cdlib.mrt.formatter.FormatterAbs: Is this a StateStringInf class
isStop() - Method in class org.cdlib.mrt.utility.ListProcessorThreads: is stop been set
isSubset() - Method in class org.cdlib.mrt.cloud.MatchMap
isSubsetOneTwo(long, long) - Method in class org.cdlib.mrt.cloud.MatchMap
isTempFile(File) - Static method in class org.cdlib.mrt.test.TestFileUtil: is this a temp file
isTempFile(File) - Static method in class org.cdlib.mrt.utility.FileUtil: is this a temp file
isThisSubset(VersionMap) - Method in class org.cdlib.mrt.cloud.VersionMap: Is testMap VersionMap a subset of this.versionMap
isTLockFile - Variable in class org.cdlib.mrt.utility.TLockFile.LockContent
isURL(String) - Static method in class org.cdlib.mrt.db.DBUtil

J

javaAlgorithm - Variable in enum org.cdlib.mrt.utility.MessageDigestType
joinStopThreads(int) - Method in class org.cdlib.mrt.utility.ListProcessorThreads: Issua a join on threads - interrupt if thread remains active - remove thread from cache
json - Enum constant in enum org.cdlib.mrt.formatter.FormatInfo
json - Enum constant in enum org.cdlib.mrt.formatter.FormatterInf.Format
json - Enum constant in enum org.cdlib.mrt.formatter.FormatType
json2 - Enum constant in enum org.cdlib.mrt.formatter.FormatterInf.Format
json2 - Enum constant in enum org.cdlib.mrt.formatter.FormatType
JSONFormatter - Class in org.cdlib.mrt.formatter: JSON output display formatter
JSONFormatter(String, LoggerInf) - Constructor for class org.cdlib.mrt.formatter.JSONFormatter
JSONFormatter(LoggerInf) - Constructor for class org.cdlib.mrt.formatter.JSONFormatter
JSONUtil - Class in org.cdlib.mrt.utility: This class is a collection of XML Utility functions.
JSONUtil() - Constructor for class org.cdlib.mrt.utility.JSONUtil

K

kernel2_1 - Enum constant in enum org.cdlib.mrt.core.DataciteConvert.StyleEnum
kernel2_2 - Enum constant in enum org.cdlib.mrt.core.DataciteConvert.StyleEnum
kernel2_3 - Enum constant in enum org.cdlib.mrt.core.DataciteConvert.StyleEnum
kernel3 - Enum constant in enum org.cdlib.mrt.core.DataciteConvert.StyleEnum
kernel3_1 - Enum constant in enum org.cdlib.mrt.core.DataciteConvert.StyleEnum
key - Variable in class org.cdlib.mrt.cloud.CloudList.CloudEntry
key - Variable in class org.cdlib.mrt.cloud.ManifestSAX
key - Variable in class org.cdlib.mrt.cloud.VersionMap.VersionFileComponent
key - Variable in class org.cdlib.mrt.utility.TimerUtil.Stat
keyHash - Variable in class org.cdlib.mrt.cloud.VersionMap
keys - Variable in class org.cdlib.mrt.core.Tika
keySet() - Method in class org.cdlib.mrt.utility.LinkedHashList: Return a list of keys for this hash

L

lastAddVersion - Variable in class org.cdlib.mrt.cloud.VersionMap
lastDeleteObject - Variable in class org.cdlib.mrt.cloud.VersionMap
lastDeleteVersion - Variable in class org.cdlib.mrt.cloud.VersionMap
lastModified - Variable in class org.cdlib.mrt.cloud.CloudList.CloudEntry
ldapName - Variable in class org.cdlib.mrt.security.CertsLDAP
LDAPUtil - Class in org.cdlib.mrt.security
LDAPUtil() - Constructor for class org.cdlib.mrt.security.LDAPUtil
lease() - Method in class org.cdlib.mrt.utility.MrtConnection
leftPad(String, int, char) - Static method in class org.cdlib.mrt.utility.StringUtil
level - Variable in enum org.cdlib.mrt.utility.LoggerInf.LogLevel
line - Variable in class org.cdlib.mrt.core.Manifest
lineLength - Variable in class org.cdlib.mrt.security.Base64.InputStream
lineLength - Variable in class org.cdlib.mrt.security.Base64.OutputStream
link - Variable in class org.cdlib.mrt.core.FileComponent
LINK - Variable in class org.cdlib.mrt.core.FileComponent
LinkedHashList<K,V> - Class in org.cdlib.mrt.utility: Specialized hash table that allows multiple entries on the same key.
LinkedHashList() - Constructor for class org.cdlib.mrt.utility.LinkedHashList
LinkedHashList(int) - Constructor for class org.cdlib.mrt.utility.LinkedHashList
listFile - Variable in class org.cdlib.mrt.core.ManifestBuild
listMatches(String, String) - Static method in class org.cdlib.mrt.utility.RegexUtil: Return list of multiple matches from single pattern match
listPattern(String, String) - Static method in class org.cdlib.mrt.utility.RegexUtil: Return the subpattern matches for a single pattern
ListProcessor - Interface in org.cdlib.mrt.utility: Provides a tool for processing large lists of items for Enrichment
ListProcessorBase - Class in org.cdlib.mrt.utility: Provides a tool for processing large lists of items for Enrichment
ListProcessorBase(TFrame) - Constructor for class org.cdlib.mrt.utility.ListProcessorBase
ListProcessorSimple - Class in org.cdlib.mrt.utility: Provides a tool for processing large lists of items for Enrichment
ListProcessorSimple(TFrame) - Constructor for class org.cdlib.mrt.utility.ListProcessorSimple
ListProcessorThreads - Class in org.cdlib.mrt.utility: Provides a tool for processing large lists of items for Enrichment Thread based processing
ListProcessorThreads(TFrame) - Constructor for class org.cdlib.mrt.utility.ListProcessorThreads
ListProcessorThreads.CloseQueue - Class in org.cdlib.mrt.utility: ProcessQue handles all process off of the database work queue
ListProcessorThreads.ProcessQueue - Class in org.cdlib.mrt.utility: ProcessQue handles all process off of the database work queue
load(InputStream) - Method in class org.cdlib.mrt.utility.MProperties
loadConfigMap(LinkedHashMap<String, Object>) - Method in class org.cdlib.mrt.tools.YamlParser
LoaderInfo - Class in org.cdlib.mrt.tools.loader
LoaderInfo() - Constructor for class org.cdlib.mrt.tools.loader.LoaderInfo
loaderManifest - Variable in class org.cdlib.mrt.tools.loader.LoaderInfo
loaderManifest - Variable in class org.cdlib.mrt.tools.loader.LoaderManifest
LoaderManifest - Class in org.cdlib.mrt.tools.loader: Process required for constructing batch and object manifest data for emulating mets feeder
LoaderManifest(String, FileComponent, File, File, URL, LoggerInf) - Constructor for class org.cdlib.mrt.tools.loader.LoaderManifest
loadExceptionLevel - Static variable in class org.cdlib.mrt.utility.TFrame
loadFileProperties(File) - Static method in class org.cdlib.mrt.utility.PropertiesUtil: Loads properties from a properties files.
loadLogger(String) - Method in class org.cdlib.mrt.utility.TFrame: Loads the registered logger.
loadProperties(String) - Static method in class org.cdlib.mrt.utility.PropertiesUtil: Loads properties from one or more properties files.
loadProperties(LoggerInf, String[]) - Method in class org.cdlib.mrt.utility.MProperties: Loads properties from one or more properties files.
loadPropertiesFileName(String) - Static method in class org.cdlib.mrt.utility.PropertiesUtil: Loads properties from one or more properties files.
loadServiceProperties(String) - Method in class org.cdlib.mrt.utility.TFrame: Load properties from an optional supplied path.
loadTable(File) - Method in class org.cdlib.mrt.utility.TallyTable: Load tally count from file
Local - Enum constant in enum org.cdlib.mrt.core.Identifier.Namespace
localID - Enum constant in enum org.cdlib.mrt.core.Checkm.ColMap
localID - Variable in class org.cdlib.mrt.core.FileComponent
localID - Variable in class org.cdlib.mrt.tools.loader.LoaderInfo
localInit() - Method in class org.cdlib.mrt.utility.TFrameInit: Call back routine for local object initialization
localProfile - Variable in class org.cdlib.mrt.core.Checkm
lockContent - Variable in class org.cdlib.mrt.utility.TLockFile
LockContent(Integer) - Constructor for class org.cdlib.mrt.utility.TLockFile.LockContent: Constructor for new LockContent based on current time
LockContent(String) - Constructor for class org.cdlib.mrt.utility.TLockFile.LockContent: Lock info extracted from string
lockFile - Variable in class org.cdlib.mrt.utility.TLockFile
LOCKING_ERROR - Enum constant in enum org.cdlib.mrt.utility.TExceptionEnum
LOCKING_ERROR(Exception) - Constructor for exception org.cdlib.mrt.utility.TException.LOCKING_ERROR
LOCKING_ERROR(Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.LOCKING_ERROR
LOCKING_ERROR(String) - Constructor for exception org.cdlib.mrt.utility.TException.LOCKING_ERROR
LOCKING_ERROR(String) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.LOCKING_ERROR
LOCKING_ERROR(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TException.LOCKING_ERROR
LOCKING_ERROR(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.LOCKING_ERROR
log(String) - Static method in class org.cdlib.mrt.core.ManifestBuild
log(String) - Static method in class org.cdlib.mrt.db.DBUtil
log(String) - Method in class org.cdlib.mrt.formatter.FormatterAbs: log output
log(String) - Method in class org.cdlib.mrt.formatter.NSMap
log(String) - Method in class org.cdlib.mrt.tools.loader.BatchLoader
log(String) - Method in class org.cdlib.mrt.tools.loader.BatchManifest
log(String) - Method in class org.cdlib.mrt.tools.loader.LoaderManifest
log(String) - Method in class org.cdlib.mrt.tools.loader.StoreLoader
log(String) - Static method in class org.cdlib.mrt.utility.SQLUtil
log(String) - Method in class org.cdlib.mrt.utility.TLockFile: debug logging
log(String, int) - Method in class org.cdlib.mrt.core.StorageAddClient
log(String, int, int) - Method in class org.cdlib.mrt.utility.ListProcessorBase: Do both framework logging and System
log(LoggerInf, String) - Static method in class org.cdlib.mrt.utility.TimerUtil
Log4j2Util - Class in org.cdlib.mrt.log.utility
Log4j2Util() - Constructor for class org.cdlib.mrt.log.utility.Log4j2Util
logDebug(String) - Method in class org.cdlib.mrt.formatter.FormatterAbs: log output when debugging is set
logDebug(String) - Method in class org.cdlib.mrt.utility.TFrame
logError(String, int) - Method in interface org.cdlib.mrt.utility.LoggerInf: Log an error message
logError(String, int) - Method in class org.cdlib.mrt.utility.TFileLogger: Log an error message
logError(String, LoggerInf.LogLevel) - Method in interface org.cdlib.mrt.utility.LoggerInf: Log an error message
logError(String, LoggerInf.LogLevel) - Method in class org.cdlib.mrt.utility.TFileLogger: Log an error message
logException(Exception) - Method in class org.cdlib.mrt.formatter.FormatterAbs: log exception
logger - Variable in class org.cdlib.mrt.cloud.ManifestSAX
logger - Variable in class org.cdlib.mrt.cloud.MatchMap
logger - Variable in class org.cdlib.mrt.cloud.VersionData
logger - Variable in class org.cdlib.mrt.cloud.VersionMap
logger - Variable in class org.cdlib.mrt.core.Checkm
logger - Variable in class org.cdlib.mrt.core.ComponentContent
logger - Variable in class org.cdlib.mrt.core.Manifest
logger - Static variable in class org.cdlib.mrt.core.ManifestBuild
logger - Variable in class org.cdlib.mrt.core.StorageAddClient
logger - Variable in class org.cdlib.mrt.core.ThreadHandler
logger - Variable in class org.cdlib.mrt.core.Tika
logger - Variable in class org.cdlib.mrt.db.DPRFileDB
logger - Variable in class org.cdlib.mrt.formatter.FormatterAbs
logger - Variable in class org.cdlib.mrt.formatter.NSMap
logger - Variable in class org.cdlib.mrt.tools.loader.BatchManifest
logger - Variable in class org.cdlib.mrt.tools.loader.LoaderManifest
logger - Variable in class org.cdlib.mrt.utility.ArchiveBuilder
logger - Variable in class org.cdlib.mrt.utility.ArchiveBuilderBase
logger - Variable in class org.cdlib.mrt.utility.HttpGet
logger - Variable in class org.cdlib.mrt.utility.ListProcessorBase
logger - Variable in class org.cdlib.mrt.utility.MessageDigestValue
logger - Variable in class org.cdlib.mrt.utility.TFrameInit
LOGGER - Static variable in class org.cdlib.mrt.log.utility.AddStateEntry
LOGGER - Static variable in class org.cdlib.mrt.log.utility.AddStateEntryGen
LoggerAbs - Class in org.cdlib.mrt.utility: Primarily used as a Factory class for LoggerInf
LoggerAbs() - Constructor for class org.cdlib.mrt.utility.LoggerAbs
LoggerInf - Interface in org.cdlib.mrt.utility: Defines behavior of classes that store informaational and error messages.
LoggerInf.LogLevel - Enum in org.cdlib.mrt.utility: Enumeration of logging levels and corresponding verbosity level
logit(int) - Method in class org.cdlib.mrt.log.test.TestLevel
logMessage(String, int) - Method in interface org.cdlib.mrt.utility.LoggerInf: Log an informational message
logMessage(String, int) - Method in class org.cdlib.mrt.utility.TFileLogger: Log an informational message to a file Default: no flush
logMessage(String, int, boolean) - Method in interface org.cdlib.mrt.utility.LoggerInf: Log an informational message
logMessage(String, int, boolean) - Method in class org.cdlib.mrt.utility.TFileLogger: Log an informational message to a file
logMessage(String, LoggerInf.LogLevel) - Method in interface org.cdlib.mrt.utility.LoggerInf: Log an informational message
logMessage(String, LoggerInf.LogLevel) - Method in class org.cdlib.mrt.utility.TFileLogger: Log an informational message to a file Default: no flush
logMessage(String, LoggerInf.LogLevel, boolean) - Method in interface org.cdlib.mrt.utility.LoggerInf: Log an informational message
logMessage(String, LoggerInf.LogLevel, boolean) - Method in class org.cdlib.mrt.utility.TFileLogger: Log an informational message to a file
logMsg(LoggerInf, String) - Static method in class org.cdlib.mrt.utility.TimerUtil
lowerCaseFirst(String) - Method in class org.cdlib.mrt.formatter.FormatterAbs: Lower case first letter of string
lowerCaseFirst(String) - Static method in class org.cdlib.mrt.utility.StringUtil: lowerCaseFirst (String) returns the passed string with first char lowercased , e.g.
LS - Static variable in class org.cdlib.mrt.tools.loader.BatchLoader
LS - Static variable in class org.cdlib.mrt.tools.loader.StoreLoader
LS - Static variable in class org.cdlib.mrt.utility.TallyTable

M

m_base - Variable in class org.cdlib.mrt.utility.TLockFile
m_classRegistry - Variable in class org.cdlib.mrt.utility.TFrame: Registered classes
m_clientProperties - Variable in class org.cdlib.mrt.utility.ListProcessorSimple
m_clientProperties - Variable in class org.cdlib.mrt.utility.ListProcessorThreads
m_dateQualifier - Variable in class org.cdlib.mrt.utility.TFileLogger
m_errCnt - Variable in class org.cdlib.mrt.utility.ListProcessorThreads
m_errMaxAllowed - Variable in class org.cdlib.mrt.utility.ListProcessorThreads
m_errorMaxLevel - Variable in class org.cdlib.mrt.utility.TFileLogger
m_filePath - Variable in class org.cdlib.mrt.utility.TFileLogger
m_framework - Variable in class org.cdlib.mrt.utility.ListProcessorBase
m_frameworkID - Variable in class org.cdlib.mrt.utility.TFrame
m_httpServletRequest - Variable in class org.cdlib.mrt.utility.TFrame
m_inCnt - Variable in class org.cdlib.mrt.utility.ListProcessorThreads
m_instanceRegistry - Variable in class org.cdlib.mrt.utility.TFrame: Registered instances.
m_lastList - Variable in class org.cdlib.mrt.utility.ListProcessorThreads
m_list - Variable in class org.cdlib.mrt.utility.ListProcessorThreads
m_lockName - Variable in class org.cdlib.mrt.utility.TLockFile
m_logFile - Variable in class org.cdlib.mrt.utility.TFileLogger
m_logger - Variable in class org.cdlib.mrt.core.ManifestRowAbs
m_logger - Variable in class org.cdlib.mrt.utility.TFrame
m_messageMaxLevel - Variable in class org.cdlib.mrt.utility.TFileLogger
m_mFrameID - Variable in class org.cdlib.mrt.utility.TFileLogger
m_ow - Variable in class org.cdlib.mrt.core.Manifest
m_properties - Variable in class org.cdlib.mrt.utility.TFrame
m_startList - Variable in class org.cdlib.mrt.utility.ListProcessorThreads
m_status - Variable in class org.cdlib.mrt.utility.ListProcessorBase
m_threadCnt - Variable in class org.cdlib.mrt.utility.ListProcessorThreads
magnetic_disk - Enum constant in enum org.cdlib.mrt.core.StorageTypesEnum
magnetic_tape - Enum constant in enum org.cdlib.mrt.core.StorageTypesEnum
main(String[]) - Static method in class org.cdlib.mrt.cloud.ManifestSAX
main(String[]) - Static method in class org.cdlib.mrt.cloud.VersionData: Main method
main(String[]) - Static method in class org.cdlib.mrt.core.Manifest: Main method
main(String[]) - Static method in class org.cdlib.mrt.core.ManifestBuild: Main method
main(String[]) - Static method in class org.cdlib.mrt.core.MessageDigest
main(String[]) - Static method in class org.cdlib.mrt.log.test.TestElement
main(String[]) - Static method in class org.cdlib.mrt.log.test.TestLevel
main(String[]) - Static method in class org.cdlib.mrt.log.test.TestUse
main(String[]) - Static method in class org.cdlib.mrt.security.Base64: Encodes or decodes two files from the command line; feel free to delete this method (in fact you probably should) if you're embedding this code into a larger program.
main(String[]) - Static method in class org.cdlib.mrt.security.ImportCert
main(String[]) - Static method in class org.cdlib.mrt.security.InstallCert
main(String[]) - Static method in class org.cdlib.mrt.test.TestFileUtil
main(String[]) - Static method in class org.cdlib.mrt.tools.loader.BatchLoader: Main method
main(String[]) - Static method in class org.cdlib.mrt.tools.loader.StoreLoader: Main method
main(String[]) - Static method in class org.cdlib.mrt.utility.ArchiveBuilder: Main method
main(String[]) - Static method in class org.cdlib.mrt.utility.ArchiveBuilderBase: Main method
main(String[]) - Static method in class org.cdlib.mrt.utility.Checksums
main(String[]) - Static method in class org.cdlib.mrt.utility.FileTrans
main(String[]) - Static method in class org.cdlib.mrt.utility.PropertiesMapper
main1(String[]) - Static method in class org.cdlib.mrt.cloud.VersionData: Main method
main2(String[]) - Static method in class org.cdlib.mrt.cloud.VersionData: Main method
main3(String[]) - Static method in class org.cdlib.mrt.cloud.VersionData: Main method
main4(String[]) - Static method in class org.cdlib.mrt.cloud.VersionData
mainOriginal(String[]) - Static method in class org.cdlib.mrt.cloud.ManifestSAX
mainTestBadMan(String[]) - Static method in class org.cdlib.mrt.cloud.ManifestSAX
makeGeneralTException(LoggerInf, String, Exception) - Method in class org.cdlib.mrt.core.ComponentContent: create TException and do appropriate logger
makeTException(String, Exception) - Method in class org.cdlib.mrt.utility.MessageDigestValue
Manifest - Class in org.cdlib.mrt.core: Generalized line based processor where each line is some functional unit.
Manifest(LoggerInf, ManifestRowInf) - Constructor for class org.cdlib.mrt.core.Manifest: Constructor
ManifestBuild - Class in org.cdlib.mrt.core: Tool for creating a Storage POST manifest used in addVersion from all files in a specific directory
ManifestBuild() - Constructor for class org.cdlib.mrt.core.ManifestBuild
ManifestBuild(TFrame) - Constructor for class org.cdlib.mrt.core.ManifestBuild
ManifestBuild.PropInfo - Class in org.cdlib.mrt.core
manifestDir - Variable in class org.cdlib.mrt.cloud.VersionData
MANIFESTEOF - Static variable in class org.cdlib.mrt.core.Manifest
manifestProfile - Variable in class org.cdlib.mrt.core.Checkm
ManifestRowAbs - Class in org.cdlib.mrt.core: Factory class for ManifestRow
ManifestRowAbs(LoggerInf) - Constructor for class org.cdlib.mrt.core.ManifestRowAbs: Constructor
ManifestRowAbs.ManifestType - Enum in org.cdlib.mrt.core: Manifest types dflat - as saved in a dflat file dflatpost - as sent to the storage service for dflat generation
ManifestRowAdd - Class in org.cdlib.mrt.core: Dflat Add manifest row support This routine is used in conjunction with Manifest for parsing the manifest process line.
ManifestRowAdd(LoggerInf) - Constructor for class org.cdlib.mrt.core.ManifestRowAdd
ManifestRowAdd(LoggerInf, Checkm) - Constructor for class org.cdlib.mrt.core.ManifestRowAdd
ManifestRowBatch - Class in org.cdlib.mrt.core: Ingest Batch manifest row support This routine is used in conjunction with Manifest for parsing the manifest process line.
ManifestRowBatch(String, LoggerInf) - Constructor for class org.cdlib.mrt.core.ManifestRowBatch
ManifestRowBatch(LoggerInf) - Constructor for class org.cdlib.mrt.core.ManifestRowBatch
ManifestRowBatch(LoggerInf, Checkm) - Constructor for class org.cdlib.mrt.core.ManifestRowBatch
ManifestRowCheckmAbs - Class in org.cdlib.mrt.core: Dflat POST manifest row support This routine is used in conjunction with Manifest for parsing the manifest process line.
ManifestRowCheckmAbs(String, LoggerInf, String[], String[]) - Constructor for class org.cdlib.mrt.core.ManifestRowCheckmAbs
ManifestRowCheckmAbs(LoggerInf, String[], String[]) - Constructor for class org.cdlib.mrt.core.ManifestRowCheckmAbs
ManifestRowCheckmAbs(LoggerInf, Checkm) - Constructor for class org.cdlib.mrt.core.ManifestRowCheckmAbs
ManifestRowInf - Interface in org.cdlib.mrt.core
ManifestRowIngest - Class in org.cdlib.mrt.core: Ingest manifest row support This routine is used in conjunction with Manifest for parsing the manifest process line.
ManifestRowIngest(LoggerInf) - Constructor for class org.cdlib.mrt.core.ManifestRowIngest
ManifestRowIngest(LoggerInf, Checkm) - Constructor for class org.cdlib.mrt.core.ManifestRowIngest
ManifestRowObject - Class in org.cdlib.mrt.core: Dflat Object manifest row support This routine is used in conjunction with Manifest for parsing the manifest process line.
ManifestRowObject(LoggerInf) - Constructor for class org.cdlib.mrt.core.ManifestRowObject
ManifestRowObject(LoggerInf, Checkm) - Constructor for class org.cdlib.mrt.core.ManifestRowObject
ManifestSAX - Class in org.cdlib.mrt.cloud: This object imports the formatTypes.xml and builds a local table of supported format types.
ManifestSAX(LoggerInf) - Constructor for class org.cdlib.mrt.cloud.ManifestSAX
ManifestStr - Class in org.cdlib.mrt.cloud: This object imports the formatTypes.xml and builds a local table of supported format types.
ManifestStr(VersionMap, File) - Constructor for class org.cdlib.mrt.cloud.ManifestStr
ManifestStr(VersionMap, OutputStream) - Constructor for class org.cdlib.mrt.cloud.ManifestStr
manInfo - Variable in class org.cdlib.mrt.cloud.ManifestSAX
ManInfo - Class in org.cdlib.mrt.cloud
ManInfo() - Constructor for class org.cdlib.mrt.cloud.ManInfo
manList - Variable in class org.cdlib.mrt.cloud.VersionMap
map - Variable in class org.cdlib.mrt.cloud.VersionData
map - Variable in class org.cdlib.mrt.formatter.ANVLFormatter
map - Variable in class org.cdlib.mrt.utility.PropertiesMapper
mapLink - Variable in class org.cdlib.mrt.cloud.VersionData
mapList - Variable in class org.cdlib.mrt.formatter.NSMap
mapOne - Variable in class org.cdlib.mrt.cloud.MatchMap
mapper - Variable in class org.cdlib.mrt.formatter.JSONFormatter
mapper - Variable in class org.cdlib.mrt.formatter.XHTMLFormatter
mapper - Variable in class org.cdlib.mrt.formatter.XMLFormatter
mapperName - Variable in class org.cdlib.mrt.formatter.JSONFormatter
mapperName - Variable in class org.cdlib.mrt.formatter.XHTMLFormatter
mapperName - Variable in class org.cdlib.mrt.formatter.XMLFormatter
mapTwo - Variable in class org.cdlib.mrt.cloud.MatchMap
match(String) - Method in class org.cdlib.mrt.utility.PropertiesMapper
matchDigests(FileComponent) - Method in class org.cdlib.mrt.core.FileComponent: Match available digests - a successful match completes test
matchFixity(FileComponent) - Method in class org.cdlib.mrt.core.FileComponent: Match this FileState to another FileState on MessageDigest
MatchMap - Class in org.cdlib.mrt.cloud: This object imports the formatTypes.xml and builds a local table of supported format types.
MatchMap(VersionMap, VersionMap, LoggerInf) - Constructor for class org.cdlib.mrt.cloud.MatchMap
matchPat(String) - Method in class org.cdlib.mrt.core.Checkm
matchRegex(String, String) - Static method in class org.cdlib.mrt.utility.StringUtil: MatchRegex (String) returns boolean value for whether string matches regex Added by SR For info on Java regex, which is quite similar to Perl regex, see http://java.sun.com/j2se/1.4.2/docs/api/java/util/regex/Pattern.html Examples: -- inString contains "a" or "b": regex = "a|b" -- inString contains "a" zero or more times: regex = "a*" -- inString contains "a" one or more times: regex = "a+"
matchString(String, String) - Method in class org.cdlib.mrt.core.FileComponent: local definition of string comparison
matchURL(URL, URL) - Method in class org.cdlib.mrt.core.FileComponent: local definition of URL comparison
matchValue(String) - Static method in enum org.cdlib.mrt.core.DataciteConvert.StyleEnum: Match the Storage ns to ns and description
MAX_LINE_LENGTH - Static variable in class org.cdlib.mrt.security.Base64: Maximum line length (76) of Base64 output.
MAX_MIMETYPE_LENGTH - Static variable in class org.cdlib.mrt.core.ManifestBuild
MAX_RETRY - Static variable in class org.cdlib.mrt.utility.HttpGet
maxTime(DateState) - Method in class org.cdlib.mrt.core.DateState: return max Date comparing this Date for another DateState
md2 - Enum constant in enum org.cdlib.mrt.utility.MessageDigestType
md5 - Enum constant in enum org.cdlib.mrt.utility.MessageDigestType
MD5 - Variable in class org.cdlib.mrt.core.FileComponent
mediaType - Variable in class org.cdlib.mrt.core.Tika
mergeProperties(Properties, Properties) - Static method in class org.cdlib.mrt.utility.PropertiesUtil: merge updates property values into another properties
MESSAGE - Static variable in class org.cdlib.mrt.core.Checkm
MESSAGE - Static variable in class org.cdlib.mrt.core.DataciteConvert
MESSAGE - Static variable in class org.cdlib.mrt.core.DC
MESSAGE - Static variable in class org.cdlib.mrt.core.FileComponent
MESSAGE - Static variable in class org.cdlib.mrt.core.Manifest
MESSAGE - Static variable in class org.cdlib.mrt.core.ManifestBuild
MESSAGE - Static variable in class org.cdlib.mrt.core.ManifestRowAbs
MESSAGE - Static variable in class org.cdlib.mrt.core.ManifestRowAdd
MESSAGE - Static variable in class org.cdlib.mrt.core.ManifestRowBatch
MESSAGE - Static variable in class org.cdlib.mrt.core.ManifestRowCheckmAbs
MESSAGE - Static variable in class org.cdlib.mrt.core.ManifestRowIngest
MESSAGE - Static variable in class org.cdlib.mrt.core.ManifestRowObject
MESSAGE - Static variable in class org.cdlib.mrt.core.ThreadHandler
MESSAGE - Static variable in class org.cdlib.mrt.db.DBConnectionPool
MESSAGE - Static variable in class org.cdlib.mrt.db.DBUtil
MESSAGE - Static variable in class org.cdlib.mrt.db.DPRFileDB
MESSAGE - Static variable in class org.cdlib.mrt.formatter.FormatterAbs
MESSAGE - Static variable in class org.cdlib.mrt.formatter.XMLMapper
MESSAGE - Static variable in class org.cdlib.mrt.security.CertsLDAP
MESSAGE - Static variable in class org.cdlib.mrt.test.TestFileUtil
MESSAGE - Variable in class org.cdlib.mrt.tools.loader.BatchLoader
MESSAGE - Static variable in class org.cdlib.mrt.tools.loader.BatchManifest
MESSAGE - Static variable in class org.cdlib.mrt.tools.loader.LoaderManifest
MESSAGE - Variable in class org.cdlib.mrt.tools.loader.StoreLoader
MESSAGE - Static variable in class org.cdlib.mrt.tools.loader.test.BatchLoaderTest
MESSAGE - Static variable in class org.cdlib.mrt.tools.loader.test.BatchManifestTest
MESSAGE - Static variable in class org.cdlib.mrt.tools.loader.test.StoreLoaderTest
MESSAGE - Static variable in class org.cdlib.mrt.utility.ArchiveBuilder
MESSAGE - Static variable in class org.cdlib.mrt.utility.ArchiveBuilderBase
MESSAGE - Static variable in class org.cdlib.mrt.utility.FileTrans
MESSAGE - Static variable in class org.cdlib.mrt.utility.FileUtil
MESSAGE - Static variable in class org.cdlib.mrt.utility.FixityTests
MESSAGE - Static variable in class org.cdlib.mrt.utility.HttpGet
MESSAGE - Variable in class org.cdlib.mrt.utility.ListProcessorBase
MESSAGE - Variable in class org.cdlib.mrt.utility.ListProcessorSimple
MESSAGE - Variable in class org.cdlib.mrt.utility.ListProcessorThreads
MESSAGE - Static variable in class org.cdlib.mrt.utility.MessageDigestValue
MESSAGE - Static variable in class org.cdlib.mrt.utility.PairtreeUtil
MESSAGE - Static variable in class org.cdlib.mrt.utility.SerializeUtil
MESSAGE - Static variable in class org.cdlib.mrt.utility.SQLUtil
MESSAGE - Static variable in class org.cdlib.mrt.utility.TallyTable
MESSAGE - Static variable in class org.cdlib.mrt.utility.TFrame
MESSAGE - Static variable in class org.cdlib.mrt.utility.TFrameInit
MESSAGE - Static variable in class org.cdlib.mrt.utility.TLockFile
MessageDigest - Class in org.cdlib.mrt.core: Conainer for a Message Digest including checksum type and checksum value
MessageDigest(String, String) - Constructor for class org.cdlib.mrt.core.MessageDigest: Constructor This form of the constructor requires a supported form of the checksum type after normalization.
MessageDigest(String, MessageDigestType) - Constructor for class org.cdlib.mrt.core.MessageDigest: Constructor
messageDigests - Variable in class org.cdlib.mrt.core.FileComponent
MessageDigestType - Enum in org.cdlib.mrt.utility: Conainer for a Message Digest including checksum type and checksum value
MessageDigestValue - Class in org.cdlib.mrt.utility: Perform Fixity tests
MessageDigestValue(File, String, LoggerInf) - Constructor for class org.cdlib.mrt.utility.MessageDigestValue: Constructur - primary form Performs checksum creation on file and extacts file size
MessageDigestValue(InputStream, String, LoggerInf) - Constructor for class org.cdlib.mrt.utility.MessageDigestValue: Constructer - primary form Performs checksum creation on file and extacts file size
MessageDigestValue.Result - Class in org.cdlib.mrt.utility
mFrame - Variable in class org.cdlib.mrt.core.ManifestBuild
mimeType - Enum constant in enum org.cdlib.mrt.core.Checkm.ColMap
mimeType - Variable in enum org.cdlib.mrt.formatter.FormatInfo
mimeType - Variable in enum org.cdlib.mrt.formatter.FormatType
mimeType - Variable in enum org.cdlib.mrt.utility.ArchiveBuilder.ArchiveType
mimeType - Variable in enum org.cdlib.mrt.utility.ArchiveBuilderBase.ArchiveType
MimeType - Variable in class org.cdlib.mrt.core.FileComponent
missingMap - Variable in class org.cdlib.mrt.cloud.MatchMap
MockConfigResolver - Class in org.cdlib.mrt.tools
MockConfigResolver() - Constructor for class org.cdlib.mrt.tools.MockConfigResolver
MockConfigResolver(String) - Constructor for class org.cdlib.mrt.tools.MockConfigResolver
mods2dc(String, LoggerInf) - Static method in class org.cdlib.mrt.core.DC: Convert a MODS XML into a DC XML String
MOM - Static variable in class org.cdlib.mrt.core.Checkm
MProperties - Class in org.cdlib.mrt.utility
MProperties() - Constructor for class org.cdlib.mrt.utility.MProperties
mrt - Enum constant in enum org.cdlib.mrt.core.Checkm.Prefix
MrtConnection - Class in org.cdlib.mrt.utility
MrtConnection(Connection, MrtConnectionPool) - Constructor for class org.cdlib.mrt.utility.MrtConnection
MrtConnectionPool - Class in org.cdlib.mrt.utility
MrtConnectionPool(String, String, String) - Constructor for class org.cdlib.mrt.utility.MrtConnectionPool

N

name - Variable in enum org.cdlib.mrt.core.Checkm.ColMap
name - Variable in enum org.cdlib.mrt.core.StorageTypesEnum
name - Variable in class org.cdlib.mrt.formatter.NSMap.NSEntry
NAME - Static variable in class org.cdlib.mrt.core.Checkm
NAME - Static variable in class org.cdlib.mrt.core.DataciteConvert
NAME - Static variable in class org.cdlib.mrt.core.DC
NAME - Static variable in class org.cdlib.mrt.core.FileComponent
NAME - Static variable in class org.cdlib.mrt.core.Manifest
NAME - Static variable in class org.cdlib.mrt.core.ManifestBuild
NAME - Static variable in class org.cdlib.mrt.core.ManifestRowAbs
NAME - Static variable in class org.cdlib.mrt.core.ManifestRowAdd
NAME - Static variable in class org.cdlib.mrt.core.ManifestRowBatch
NAME - Static variable in class org.cdlib.mrt.core.ManifestRowCheckmAbs
NAME - Static variable in class org.cdlib.mrt.core.ManifestRowIngest
NAME - Static variable in class org.cdlib.mrt.core.ManifestRowObject
NAME - Static variable in class org.cdlib.mrt.core.ThreadHandler
NAME - Static variable in class org.cdlib.mrt.db.DBConnectionPool
NAME - Static variable in class org.cdlib.mrt.db.DBUtil
NAME - Static variable in class org.cdlib.mrt.db.DPRFileDB
NAME - Static variable in class org.cdlib.mrt.formatter.FormatterAbs
NAME - Static variable in class org.cdlib.mrt.formatter.XMLMapper
NAME - Static variable in class org.cdlib.mrt.security.CertsLDAP
NAME - Static variable in class org.cdlib.mrt.test.TestFileUtil
NAME - Variable in class org.cdlib.mrt.tools.loader.BatchLoader
NAME - Static variable in class org.cdlib.mrt.tools.loader.BatchManifest
NAME - Static variable in class org.cdlib.mrt.tools.loader.LoaderManifest
NAME - Variable in class org.cdlib.mrt.tools.loader.StoreLoader
NAME - Static variable in class org.cdlib.mrt.tools.loader.test.BatchLoaderTest
NAME - Static variable in class org.cdlib.mrt.tools.loader.test.BatchManifestTest
NAME - Static variable in class org.cdlib.mrt.tools.loader.test.StoreLoaderTest
NAME - Static variable in class org.cdlib.mrt.utility.ArchiveBuilder
NAME - Static variable in class org.cdlib.mrt.utility.ArchiveBuilderBase
NAME - Static variable in class org.cdlib.mrt.utility.FileTrans
NAME - Static variable in class org.cdlib.mrt.utility.FileUtil
NAME - Static variable in class org.cdlib.mrt.utility.FixityTests
NAME - Static variable in class org.cdlib.mrt.utility.HttpGet
NAME - Variable in class org.cdlib.mrt.utility.ListProcessorBase
NAME - Variable in class org.cdlib.mrt.utility.ListProcessorSimple
NAME - Variable in class org.cdlib.mrt.utility.ListProcessorThreads
NAME - Static variable in class org.cdlib.mrt.utility.MessageDigestValue
NAME - Static variable in class org.cdlib.mrt.utility.PairtreeUtil
NAME - Static variable in class org.cdlib.mrt.utility.SerializeUtil
NAME - Static variable in class org.cdlib.mrt.utility.SQLUtil
NAME - Static variable in class org.cdlib.mrt.utility.TallyTable
NAME - Static variable in class org.cdlib.mrt.utility.TFrame
NAME - Static variable in class org.cdlib.mrt.utility.TFrameInit
NAME - Static variable in class org.cdlib.mrt.utility.TLockFile
namespace - Variable in class org.cdlib.mrt.core.Identifier
nanoTime - Variable in class org.cdlib.mrt.utility.TLockFile.LockContent
near_line - Enum constant in enum org.cdlib.mrt.core.StorageTypesEnum
NEARLINE_RESTORE_IN_PROCESS - Enum constant in enum org.cdlib.mrt.utility.TExceptionEnum
NEARLINE_RESTORE_IN_PROCESS(Exception) - Constructor for exception org.cdlib.mrt.utility.TException.NEARLINE_RESTORE_IN_PROCESS
NEARLINE_RESTORE_IN_PROCESS(String) - Constructor for exception org.cdlib.mrt.utility.TException.NEARLINE_RESTORE_IN_PROCESS
NEARLINE_RESTORE_IN_PROCESS(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TException.NEARLINE_RESTORE_IN_PROCESS
NEW_LINE - Static variable in class org.cdlib.mrt.security.Base64: The new line character (\n) as a byte.
nextElement() - Method in class org.cdlib.mrt.core.Manifest: Return manifest row handling object
nfo - Enum constant in enum org.cdlib.mrt.core.Checkm.Prefix
nie - Enum constant in enum org.cdlib.mrt.core.Checkm.Prefix
NL - Static variable in class org.cdlib.mrt.core.FileComponent
NL - Static variable in class org.cdlib.mrt.core.FileContent
NL - Static variable in class org.cdlib.mrt.core.StorageAddClient
NL - Static variable in class org.cdlib.mrt.db.DBUtil
NL - Static variable in class org.cdlib.mrt.formatter.FormatterAbs
NL - Static variable in class org.cdlib.mrt.formatter.XMLMapper
NL - Static variable in class org.cdlib.mrt.tools.loader.LoaderInfo
NL - Static variable in class org.cdlib.mrt.tools.loader.test.BatchLoaderTest
NL - Static variable in class org.cdlib.mrt.tools.loader.test.BatchManifestTest
NL - Static variable in class org.cdlib.mrt.tools.loader.test.StoreLoaderTest
NL - Static variable in class org.cdlib.mrt.utility.PropertiesUtil
NO_OPTIONS - Static variable in class org.cdlib.mrt.security.Base64: No options specified.
node - Variable in class org.cdlib.mrt.cloud.VersionData
node - Variable in class org.cdlib.mrt.cloud.VersionMap
nodeID - Variable in class org.cdlib.mrt.tools.loader.StoreLoader
NOMATCH_ATTEMPTS - Static variable in class org.cdlib.mrt.utility.TLockFile
NONE - Static variable in class org.cdlib.mrt.core.Checkm
norm(String) - Method in class org.cdlib.mrt.formatter.NSMap
normBox(URL) - Static method in class org.cdlib.mrt.core.FileComponent
normExtension(String) - Static method in class org.cdlib.mrt.utility.FileTrans: Lower case extension if present Note extension is defined here as characters following trailing period with 5 or less characters This test is only performed on files that contain a translation
normKey(String, String) - Static method in class org.cdlib.mrt.utility.TimerUtil
normMsg(String, String) - Static method in class org.cdlib.mrt.utility.TimerUtil
normParm(String) - Static method in class org.cdlib.mrt.utility.StringUtil: A common normalization for parms: if null or has length zero then set null if all space characters set null trim space characters
ns - Variable in enum org.cdlib.mrt.core.DataciteConvert.StyleEnum
ns - Variable in class org.cdlib.mrt.formatter.NSMap.NSEntry
NSEntry() - Constructor for class org.cdlib.mrt.formatter.NSMap.NSEntry
NSMap - Class in org.cdlib.mrt.formatter: Create a Name Space Map for formatting
NSMap(String, LoggerInf) - Constructor for class org.cdlib.mrt.formatter.NSMap
NSMap.NSEntry - Class in org.cdlib.mrt.formatter
nsMapBase - Variable in class org.cdlib.mrt.formatter.XMLMapper
numActualFiles - Variable in class org.cdlib.mrt.cloud.VersionMap.VersionStats
numericEncoding(String) - Static method in class org.cdlib.mrt.utility.XMLUtil
numFiles - Variable in class org.cdlib.mrt.cloud.VersionMap.VersionStats
numSigBytes - Variable in class org.cdlib.mrt.security.Base64.InputStream

O

object - Enum constant in enum org.cdlib.mrt.core.ManifestRowAbs.ManifestType
objectID - Variable in class org.cdlib.mrt.cloud.VersionData
objectID - Variable in class org.cdlib.mrt.cloud.VersionMap
objectID - Variable in class org.cdlib.mrt.core.ComponentContent
octet - Enum constant in enum org.cdlib.mrt.formatter.FormatInfo
octet - Enum constant in enum org.cdlib.mrt.formatter.FormatType
off_line - Enum constant in enum org.cdlib.mrt.core.StorageTypesEnum
on_line - Enum constant in enum org.cdlib.mrt.core.StorageTypesEnum
openOutput(File) - Method in class org.cdlib.mrt.core.Manifest: Output file to write new manifest
openOutput(OutputStream) - Method in class org.cdlib.mrt.core.Manifest: Use output stream for writing out manifest
optical_disk - Enum constant in enum org.cdlib.mrt.core.StorageTypesEnum
ORDERED - Static variable in class org.cdlib.mrt.security.Base64: Encode using the special "ordered" dialect of Base64 described here: http://www.faqs.org/qa/rfcc-1940.html.
orderMap - Variable in class org.cdlib.mrt.core.Checkm
org.cdlib.mrt.cloud - package org.cdlib.mrt.cloud
org.cdlib.mrt.core - package org.cdlib.mrt.core
org.cdlib.mrt.db - package org.cdlib.mrt.db
org.cdlib.mrt.formatter - package org.cdlib.mrt.formatter
org.cdlib.mrt.log.test - package org.cdlib.mrt.log.test
org.cdlib.mrt.log.utility - package org.cdlib.mrt.log.utility
org.cdlib.mrt.security - package org.cdlib.mrt.security
org.cdlib.mrt.test - package org.cdlib.mrt.test
org.cdlib.mrt.tools - package org.cdlib.mrt.tools
org.cdlib.mrt.tools.loader - package org.cdlib.mrt.tools.loader
org.cdlib.mrt.tools.loader.test - package org.cdlib.mrt.tools.loader.test
org.cdlib.mrt.utility - package org.cdlib.mrt.utility
originalActualCount - Variable in class org.cdlib.mrt.cloud.VersionMap
originalActualSize - Variable in class org.cdlib.mrt.cloud.VersionMap
originalFileCount - Variable in class org.cdlib.mrt.cloud.VersionMap
originalLastAddVersion - Variable in class org.cdlib.mrt.cloud.VersionMap
originalLastDeleteVersion - Variable in class org.cdlib.mrt.cloud.VersionMap
originalTotalSize - Variable in class org.cdlib.mrt.cloud.VersionMap
originalVersionCnt - Variable in class org.cdlib.mrt.cloud.VersionMap
out(String) - Method in class org.cdlib.mrt.cloud.ManifestStr
OUTDELIM - Variable in class org.cdlib.mrt.core.Checkm
outFile - Variable in class org.cdlib.mrt.utility.HttpGet
outputBatchFile - Variable in class org.cdlib.mrt.tools.loader.BatchLoader
outputBatchFile - Variable in class org.cdlib.mrt.tools.loader.BatchManifest
outputBatchFile - Variable in class org.cdlib.mrt.tools.loader.StoreLoader
outputDir - Variable in class org.cdlib.mrt.cloud.VersionData
outputManifestBaseURL - Variable in class org.cdlib.mrt.tools.loader.BatchLoader
outputManifestBaseURL - Variable in class org.cdlib.mrt.tools.loader.BatchManifest
outputManifestBaseURL - Variable in class org.cdlib.mrt.tools.loader.StoreLoader
outputManifestDirectory - Variable in class org.cdlib.mrt.tools.loader.BatchManifest
outputManifestDirectoryBase - Variable in class org.cdlib.mrt.tools.loader.BatchLoader
outputManifestDirectoryBase - Variable in class org.cdlib.mrt.tools.loader.StoreLoader
outputManifestURL - Variable in class org.cdlib.mrt.tools.loader.BatchLoader
outputManifestURL - Variable in class org.cdlib.mrt.tools.loader.BatchManifest
outputManifestURL - Variable in class org.cdlib.mrt.tools.loader.StoreLoader
outputStream - Variable in class org.cdlib.mrt.utility.ArchiveBuilder
outputStream - Variable in class org.cdlib.mrt.utility.ArchiveBuilderBase
OutputStream(OutputStream) - Constructor for class org.cdlib.mrt.security.Base64.OutputStream: Constructs a Base64.OutputStream in ENCODE mode.
OutputStream(OutputStream, int) - Constructor for class org.cdlib.mrt.security.Base64.OutputStream: Constructs a Base64.OutputStream in either ENCODE or DECODE mode.
outStream - Variable in class org.cdlib.mrt.cloud.ManifestStr

P

PairtreeUtil - Class in org.cdlib.mrt.utility: DateUtil - date utility methods
PairtreeUtil() - Constructor for class org.cdlib.mrt.utility.PairtreeUtil
parse(Reader) - Method in class org.cdlib.mrt.tools.YamlParser
parse(String) - Method in class org.cdlib.mrt.tools.YamlParser
parseString(String) - Method in class org.cdlib.mrt.tools.YamlParser
partial - Enum constant in enum org.cdlib.mrt.core.ServiceStatus
paused - Enum constant in enum org.cdlib.mrt.core.ServiceStatus
PingState - Class in org.cdlib.mrt.core: Return general runtime information about this servlet
PingState(String) - Constructor for class org.cdlib.mrt.core.PingState
PingState(String, boolean) - Constructor for class org.cdlib.mrt.core.PingState: Initialize Ping state
pollTime - Variable in class org.cdlib.mrt.core.ThreadHandler
pool - Variable in class org.cdlib.mrt.db.DPRFileDB
populateTest(File, String, int, int) - Static method in class org.cdlib.mrt.test.TestFileUtil: Create a test directory of form: A AA AB AC ...
populateTest(File, String, int, int) - Static method in class org.cdlib.mrt.utility.FileUtil: Create a test directory of form: A AA AB AC ...
position - Variable in class org.cdlib.mrt.security.Base64.InputStream
position - Variable in class org.cdlib.mrt.security.Base64.OutputStream
postHttpResponse(String, Properties, int) - Static method in class org.cdlib.mrt.utility.HTTPUtil: Send this manifestFile to mrt store
postMultipartHeader(String, Properties, Properties, Map<String, File>, int) - Static method in class org.cdlib.mrt.utility.HTTPUtil: Do multipart post
postMultipartHttpResponse(String, Properties, Map<String, File>, int) - Static method in class org.cdlib.mrt.utility.HTTPUtil: Do multipart post
postMultipartHttpResponse2(String, Properties, Map<String, File>, int) - Static method in class org.cdlib.mrt.utility.HTTPUtil: Do multipart post
postMultipartObject(String, Properties, Map<String, File>, int) - Static method in class org.cdlib.mrt.utility.HTTPUtil: Return InputStream from multipart request
postMultipartObject2(String, Properties, Map<String, File>, int) - Static method in class org.cdlib.mrt.utility.HTTPUtil: Return InputStream from multipart request
postObject(String, Properties, int) - Static method in class org.cdlib.mrt.utility.HTTPUtil: Send this manifestFile to mrt store
PREFERRED_ENCODING - Static variable in class org.cdlib.mrt.security.Base64: Preferred encoding.
prefix - Variable in enum org.cdlib.mrt.core.Checkm.Prefix
prefix - Variable in class org.cdlib.mrt.core.Manifest
PREFIX - Static variable in class org.cdlib.mrt.core.Checkm
prefixTable - Variable in class org.cdlib.mrt.core.Checkm
prevLine - Variable in class org.cdlib.mrt.core.Manifest
primaryID - Enum constant in enum org.cdlib.mrt.core.Checkm.ColMap
primaryID - Variable in class org.cdlib.mrt.core.FileComponent
primaryID - Variable in class org.cdlib.mrt.tools.loader.LoaderInfo
print(String, String, boolean, boolean, int, PrintStream) - Method in class org.cdlib.mrt.formatter.ANVLFormatter
print(String, String, boolean, boolean, int, PrintStream) - Method in class org.cdlib.mrt.formatter.FormatterAbs: Formatted entry value
print(String, String, boolean, boolean, int, PrintStream) - Method in class org.cdlib.mrt.formatter.JSONFormatter
print(String, String, boolean, boolean, int, PrintStream) - Method in class org.cdlib.mrt.formatter.XHTMLFormatter
print(String, String, boolean, boolean, int, PrintStream) - Method in class org.cdlib.mrt.formatter.XMLFormatter
printBegin(StateInf, PrintStream) - Method in class org.cdlib.mrt.formatter.ANVLFormatter
printBegin(StateInf, PrintStream) - Method in class org.cdlib.mrt.formatter.FormatterAbs: Beginning of formatting
printBegin(StateInf, PrintStream) - Method in class org.cdlib.mrt.formatter.JSONFormatter
printBegin(StateInf, PrintStream) - Method in class org.cdlib.mrt.formatter.XHTMLFormatter
printBegin(StateInf, PrintStream) - Method in class org.cdlib.mrt.formatter.XMLFormatter
printClose(String, int, PrintStream) - Method in class org.cdlib.mrt.formatter.ANVLFormatter
printClose(String, int, PrintStream) - Method in class org.cdlib.mrt.formatter.FormatterAbs: Closing element entry.
printClose(String, int, PrintStream) - Method in class org.cdlib.mrt.formatter.JSONFormatter
printClose(String, int, PrintStream) - Method in class org.cdlib.mrt.formatter.XHTMLFormatter
printClose(String, int, PrintStream) - Method in class org.cdlib.mrt.formatter.XMLFormatter
printEnd(PrintStream) - Method in class org.cdlib.mrt.formatter.ANVLFormatter
printEnd(PrintStream) - Method in class org.cdlib.mrt.formatter.FormatterAbs: End of formatting
printEnd(PrintStream) - Method in class org.cdlib.mrt.formatter.JSONFormatter
printEnd(PrintStream) - Method in class org.cdlib.mrt.formatter.XHTMLFormatter
printEnd(PrintStream) - Method in class org.cdlib.mrt.formatter.XMLFormatter
printEnd_Concatenation(PrintStream) - Method in class org.cdlib.mrt.formatter.ANVLFormatter: Example of ANVL output using concatenation of identical keys using ;
printOut - Variable in class org.cdlib.mrt.core.ManifestBuild
printStart(String, boolean, int, PrintStream) - Method in class org.cdlib.mrt.formatter.ANVLFormatter
printStart(String, boolean, int, PrintStream) - Method in class org.cdlib.mrt.formatter.FormatterAbs: Beginning element entry.
printStart(String, boolean, int, PrintStream) - Method in class org.cdlib.mrt.formatter.JSONFormatter
printStart(String, boolean, int, PrintStream) - Method in class org.cdlib.mrt.formatter.XHTMLFormatter
printStart(String, boolean, int, PrintStream) - Method in class org.cdlib.mrt.formatter.XMLFormatter
printStatus(byte) - Static method in class org.cdlib.mrt.utility.ZooCodeUtil
process() - Method in class org.cdlib.mrt.utility.TimerUtil
process(File) - Method in class org.cdlib.mrt.utility.Checksums
process(InputStream) - Method in class org.cdlib.mrt.cloud.ManifestSAX
process(InputStream) - Method in class org.cdlib.mrt.utility.Checksums
process(String, Properties) - Method in class org.cdlib.mrt.tools.loader.BatchLoader: Process an incoming line which contains 1) ark 2) sequence number Use the ark for issuing an addVersion to a storage service
process(String, Properties) - Method in class org.cdlib.mrt.tools.loader.StoreLoader: Process an incoming line which contains 1) ark 2) sequence number Use the ark for issuing an addVersion to a storage service
process(String, Properties) - Method in interface org.cdlib.mrt.utility.ListProcessor: Process on EnrichmentList item
process(String, Properties) - Method in class org.cdlib.mrt.utility.ListProcessorSimple: Process on EnrichmentList item
process(String, Properties) - Method in class org.cdlib.mrt.utility.ListProcessorThreads: Process on EnrichmentList item
PROCESSCNT - Variable in class org.cdlib.mrt.utility.ListProcessorBase
processCompletion() - Method in class org.cdlib.mrt.utility.ListProcessorThreads: Call back method for handling end of process
processing - Enum constant in enum org.cdlib.mrt.core.FixityStatusType
processLinkedHashList(Method, Object, boolean, int, PrintStream) - Method in class org.cdlib.mrt.formatter.FormatterAbs: process reference type
processLinkedHashList(LinkedHashList<String, Object>, String, boolean, int, PrintStream) - Method in class org.cdlib.mrt.formatter.FormatterAbs
processList - Variable in class org.cdlib.mrt.tools.loader.BatchLoader
processList - Variable in class org.cdlib.mrt.tools.loader.StoreLoader
processList() - Method in class org.cdlib.mrt.utility.ListProcessorSimple: Find list to process and sequentially process the list Note properties: start - beginning offset of list to process last - last offset of list to process
processList() - Method in class org.cdlib.mrt.utility.ListProcessorThreads: Find list to process and sequentially process the list Note properties: start - beginning offset of list to process last - last offset of list to process
processList(Method, Object, boolean, int, PrintStream) - Method in class org.cdlib.mrt.formatter.FormatterAbs: Using reflection, process a list of values.
processManifest(String, FileComponent, File, String, String) - Method in class org.cdlib.mrt.tools.loader.StoreLoader
processMap(Method, Object, boolean, int, PrintStream) - Method in class org.cdlib.mrt.formatter.FormatterAbs: process reference type
processMap(Map<Object, Object>, String, boolean, int, PrintStream) - Method in class org.cdlib.mrt.formatter.FormatterAbs
ProcessQueue() - Constructor for class org.cdlib.mrt.utility.ListProcessorThreads.ProcessQueue
processResponse(HttpResponse) - Method in class org.cdlib.mrt.core.StorageAddClient
processStatus - Variable in class org.cdlib.mrt.utility.TimerUtil
ProcessStatus - Enum in org.cdlib.mrt.core: Status for specific process
PROCESSTIME - Variable in class org.cdlib.mrt.utility.ListProcessorBase
profile - Variable in class org.cdlib.mrt.tools.loader.BatchLoader
PROFILE - Static variable in class org.cdlib.mrt.core.Checkm
profiles - Static variable in class org.cdlib.mrt.core.ManifestRowAdd
profiles - Static variable in class org.cdlib.mrt.core.ManifestRowBatch
profiles - Static variable in class org.cdlib.mrt.core.ManifestRowIngest
profiles - Static variable in class org.cdlib.mrt.core.ManifestRowObject
prop - Variable in class org.cdlib.mrt.core.PingState
prop - Variable in class org.cdlib.mrt.formatter.XMLMapper
prop - Variable in class org.cdlib.mrt.security.CertsLDAP
prop2File(Properties, String, File) - Static method in class org.cdlib.mrt.utility.PropertiesUtil
prop2LinkedHashList(Properties) - Static method in class org.cdlib.mrt.utility.PropertiesUtil
PropertiesMapper - Class in org.cdlib.mrt.utility
PropertiesMapper(String, Properties) - Constructor for class org.cdlib.mrt.utility.PropertiesMapper
PropertiesUtil - Class in org.cdlib.mrt.utility
PropertiesUtil() - Constructor for class org.cdlib.mrt.utility.PropertiesUtil
propFile - Variable in class org.cdlib.mrt.core.ManifestBuild
PropInfo() - Constructor for class org.cdlib.mrt.core.ManifestBuild.PropInfo
pToken - Static variable in class org.cdlib.mrt.tools.DefaultConfigResolver
put(K, V) - Method in class org.cdlib.mrt.utility.LinkedHashList: add element to list.
putMultipartHttpResponse(String, Properties, Map<String, File>, int) - Static method in class org.cdlib.mrt.utility.HTTPUtil: Do multipart post
putMultipartObject(String, Properties, Map<String, File>, int) - Static method in class org.cdlib.mrt.utility.HTTPUtil: Return InputStream from multipart request
PW - Static variable in class org.cdlib.mrt.db.DPRFileDB

Q

queue - Variable in class org.cdlib.mrt.utility.TallyTable
queued - Enum constant in enum org.cdlib.mrt.core.ProcessStatus

R

read() - Method in class org.cdlib.mrt.security.Base64.InputStream: Reads enough of the input stream to convert to/from Base64 and returns the next byte.
read() - Method in class org.cdlib.mrt.utility.ListProcessorThreads: Find list to process and sequentially process the list Note properties: start - beginning offset of list to process last - last offset of list to process
read(byte[], int, int) - Method in class org.cdlib.mrt.security.Base64.InputStream: Calls Base64.InputStream.read() repeatedly until the end of stream is reached or len bytes are read.
reapConnections() - Method in class org.cdlib.mrt.utility.MrtConnectionPool
rebuildHash() - Method in class org.cdlib.mrt.cloud.VersionMap
RegexPatternCache - Class in org.cdlib.mrt.utility: RegexPatternCache Provides a cache for compiled Regex compiled Patterns
RegexPatternCache() - Constructor for class org.cdlib.mrt.utility.RegexPatternCache
RegexUtil - Class in org.cdlib.mrt.utility: This class contains a set of utilities that were built to emulate some of the nicer Perl conversion functions.
RegexUtil() - Constructor for class org.cdlib.mrt.utility.RegexUtil
region - Static variable in class org.cdlib.mrt.tools.SSMConfigResolver
registerClasses() - Method in class org.cdlib.mrt.utility.TFrame: Registers classes by examining the framework properties and extracting values for all keys starting with "class".
REGISTRY - Static variable in class org.cdlib.mrt.core.Checkm
REMOTE_IO_SERVICE_EXCEPTION - Enum constant in enum org.cdlib.mrt.utility.TExceptionEnum
REMOTE_IO_SERVICE_EXCEPTION(Exception) - Constructor for exception org.cdlib.mrt.utility.TException.REMOTE_IO_SERVICE_EXCEPTION
REMOTE_IO_SERVICE_EXCEPTION(String) - Constructor for exception org.cdlib.mrt.utility.TException.REMOTE_IO_SERVICE_EXCEPTION
REMOTE_IO_SERVICE_EXCEPTION(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TException.REMOTE_IO_SERVICE_EXCEPTION
remoteException - Variable in exception org.cdlib.mrt.utility.TException
remoteException - Variable in exception org.cdlib.mrt.utility.TRuntimeException
remove() - Method in class org.cdlib.mrt.utility.TLockFile: delete lock
removeControl(String) - Static method in class org.cdlib.mrt.utility.StringUtil: removeControl - replace ASCII control characters with blank
removeFile(File) - Static method in class org.cdlib.mrt.test.TestFileUtil
removeFile(File) - Static method in class org.cdlib.mrt.utility.FileUtil
removeLineFromFile(String, String, String) - Static method in class org.cdlib.mrt.test.TestFileUtil: remove line(s) from a text file
removeLineFromFile(String, String, String) - Static method in class org.cdlib.mrt.utility.FileUtil: remove line(s) from a text file
removePairDirectory(File) - Static method in class org.cdlib.mrt.utility.PairtreeUtil: Remove pair directory and remove a parent directory to baseDirectory, but not including base directory
removeXMLHeader(String) - Static method in class org.cdlib.mrt.utility.XMLUtil
replaceLock(int) - Method in class org.cdlib.mrt.utility.TLockFile: replace existing lock with this lock if existing lock exceeds the number of seconds provided.
replacePatternString(String, String, String, String) - Static method in class org.cdlib.mrt.utility.RegexUtil: Use from and to values to do a replacement within strings matching the given pattern
replaceStaleLock() - Method in class org.cdlib.mrt.utility.TLockFile: replace existing lock with this lock if existing lock stale time exceeds current time
replaceString(String, String, String) - Static method in class org.cdlib.mrt.utility.RegexUtil: replace a substring value with another substring value
REQUEST_ELEMENT_UNSUPPORTED - Enum constant in enum org.cdlib.mrt.utility.TExceptionEnum
REQUEST_ELEMENT_UNSUPPORTED(Exception) - Constructor for exception org.cdlib.mrt.utility.TException.REQUEST_ELEMENT_UNSUPPORTED
REQUEST_ELEMENT_UNSUPPORTED(Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.REQUEST_ELEMENT_UNSUPPORTED
REQUEST_ELEMENT_UNSUPPORTED(String) - Constructor for exception org.cdlib.mrt.utility.TException.REQUEST_ELEMENT_UNSUPPORTED
REQUEST_ELEMENT_UNSUPPORTED(String) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.REQUEST_ELEMENT_UNSUPPORTED
REQUEST_ELEMENT_UNSUPPORTED(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TException.REQUEST_ELEMENT_UNSUPPORTED
REQUEST_ELEMENT_UNSUPPORTED(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.REQUEST_ELEMENT_UNSUPPORTED
REQUEST_INVALID - Enum constant in enum org.cdlib.mrt.utility.TExceptionEnum
REQUEST_INVALID(Exception) - Constructor for exception org.cdlib.mrt.utility.TException.REQUEST_INVALID
REQUEST_INVALID(Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.REQUEST_INVALID
REQUEST_INVALID(String) - Constructor for exception org.cdlib.mrt.utility.TException.REQUEST_INVALID
REQUEST_INVALID(String) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.REQUEST_INVALID
REQUEST_INVALID(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TException.REQUEST_INVALID
REQUEST_INVALID(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.REQUEST_INVALID
REQUEST_ITEM_EXISTS - Enum constant in enum org.cdlib.mrt.utility.TExceptionEnum
REQUEST_ITEM_EXISTS(Exception) - Constructor for exception org.cdlib.mrt.utility.TException.REQUEST_ITEM_EXISTS
REQUEST_ITEM_EXISTS(Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.REQUEST_ITEM_EXISTS
REQUEST_ITEM_EXISTS(String) - Constructor for exception org.cdlib.mrt.utility.TException.REQUEST_ITEM_EXISTS
REQUEST_ITEM_EXISTS(String) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.REQUEST_ITEM_EXISTS
REQUEST_ITEM_EXISTS(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TException.REQUEST_ITEM_EXISTS
REQUEST_ITEM_EXISTS(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.REQUEST_ITEM_EXISTS
REQUESTED_ITEM_NOT_FOUND - Enum constant in enum org.cdlib.mrt.utility.TExceptionEnum
REQUESTED_ITEM_NOT_FOUND(Exception) - Constructor for exception org.cdlib.mrt.utility.TException.REQUESTED_ITEM_NOT_FOUND
REQUESTED_ITEM_NOT_FOUND(Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.REQUESTED_ITEM_NOT_FOUND
REQUESTED_ITEM_NOT_FOUND(String) - Constructor for exception org.cdlib.mrt.utility.TException.REQUESTED_ITEM_NOT_FOUND
REQUESTED_ITEM_NOT_FOUND(String) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.REQUESTED_ITEM_NOT_FOUND
REQUESTED_ITEM_NOT_FOUND(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TException.REQUESTED_ITEM_NOT_FOUND
REQUESTED_ITEM_NOT_FOUND(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.REQUESTED_ITEM_NOT_FOUND
requiredProp(Properties, Properties, String) - Method in class org.cdlib.mrt.utility.ListProcessorBase: copy property from one Properties to another and throw exception if not found
reset - Enum constant in enum org.cdlib.mrt.core.ProcessStatus
resolveConfigValue(String) - Method in class org.cdlib.mrt.tools.DefaultConfigResolver
resolveObjectValue(Object) - Method in class org.cdlib.mrt.tools.DefaultConfigResolver
resolveValues() - Method in class org.cdlib.mrt.tools.YamlParser
resolveValues(LinkedHashMap<String, Object>) - Method in class org.cdlib.mrt.tools.DefaultConfigResolver
resolveValues(LinkedHashMap<String, Object>) - Method in interface org.cdlib.mrt.tools.UC3ConfigResolver
resolveValues(LinkedHashMap<String, Object>) - Method in class org.cdlib.mrt.tools.YamlParser
resource - Variable in class org.cdlib.mrt.formatter.NSMap.NSEntry
resourceBR - Variable in class org.cdlib.mrt.formatter.NSMap
resourceName - Variable in enum org.cdlib.mrt.core.DataciteConvert.StyleEnum
resourceName - Variable in class org.cdlib.mrt.formatter.NSMap
response2Property(HttpResponse) - Static method in class org.cdlib.mrt.utility.HTTPUtil
Result(long, String, MessageDigestType) - Constructor for class org.cdlib.mrt.utility.MessageDigestValue.Result
resumeEncoding() - Method in class org.cdlib.mrt.security.Base64.OutputStream: Resumes encoding of the stream.
retrieveENC(String) - Static method in class org.cdlib.mrt.db.DPRFileDB
retryLock(int, int, int) - Method in class org.cdlib.mrt.utility.TLockFile: Retry setting lock - Issue several threads waiting on same lock.
returnConnection(MrtConnection) - Method in class org.cdlib.mrt.utility.MrtConnectionPool
returnsList(Method) - Method in class org.cdlib.mrt.formatter.FormatterAbs: If the return class is a list this is true
returnsMap(Method) - Method in class org.cdlib.mrt.formatter.FormatterAbs: If the return class is a map this is true
rowFactory - Variable in class org.cdlib.mrt.core.Manifest
run() - Method in class org.cdlib.mrt.core.ManifestBuild: Loop through list of data directories to have manifest generation
run() - Method in class org.cdlib.mrt.tools.loader.BatchManifest
run() - Method in class org.cdlib.mrt.utility.ListProcessorThreads.CloseQueue: process queue
run() - Method in class org.cdlib.mrt.utility.ListProcessorThreads.ProcessQueue: process queue
run() - Method in class org.cdlib.mrt.utility.ListProcessorThreads
run() - Method in class org.cdlib.mrt.utility.TimerUtil
run(String, Vector<LoaderInfo>, File, URL, URL, LoggerInf) - Static method in class org.cdlib.mrt.tools.loader.BatchManifest
run(ManifestRowAbs.ManifestType) - Method in class org.cdlib.mrt.tools.loader.LoaderManifest
run(ManifestRowAbs.ManifestType, String, FileComponent, File, File, URL, LoggerInf) - Static method in class org.cdlib.mrt.tools.loader.LoaderManifest
runException - Variable in class org.cdlib.mrt.utility.TimerUtil
runMethod(Method, Object) - Method in class org.cdlib.mrt.formatter.FormatterAbs: Reflection mechanism to run a method
running - Enum constant in enum org.cdlib.mrt.core.ServiceStatus
runStringMethod(Method, String, Object) - Method in class org.cdlib.mrt.formatter.FormatterAbs: Runs toString() for this method
runThread(Runnable) - Method in class org.cdlib.mrt.core.ThreadHandler
RuntimeConfigException - Exception in org.cdlib.mrt.tools
RuntimeConfigException(String) - Constructor for exception org.cdlib.mrt.tools.RuntimeConfigException

S

sameOneTwo() - Method in class org.cdlib.mrt.cloud.MatchMap
saveComments - Variable in class org.cdlib.mrt.core.Checkm
saveComponentContent(int, File, String, String) - Method in class org.cdlib.mrt.cloud.VersionData
saveException - Variable in class org.cdlib.mrt.core.ThreadHandler
saveTable(File) - Method in class org.cdlib.mrt.utility.TallyTable
saxParser - Variable in class org.cdlib.mrt.cloud.ManifestSAX
schema - Variable in enum org.cdlib.mrt.core.DataciteConvert.StyleEnum
sContainer(String) - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
sContentType(String) - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
sCreated(DateState) - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
sDigest(MessageDigest) - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
search(String, String, String, String[], String, String) - Static method in class org.cdlib.mrt.security.LDAPUtil
SecurityUtil - Class in org.cdlib.mrt.security
SecurityUtil() - Constructor for class org.cdlib.mrt.security.SecurityUtil
SEGMENT - Static variable in class org.cdlib.mrt.utility.HttpGet
sendAddMultipart(String, Integer, Identifier, String, String, File, String, Long, String, String, String) - Method in class org.cdlib.mrt.core.StorageAddClient
sendAddMultipart(String, Integer, Identifier, String, String, File, String, Long, String, String, String, int) - Method in class org.cdlib.mrt.core.StorageAddClient
sendAddMultipartRetry(String, Integer, Identifier, String, String, File, String, Long, String, String, String, int, int) - Method in class org.cdlib.mrt.core.StorageAddClient: getObject with timeout and retry
sendAddMultipartRetryProperties(String, Integer, Identifier, String, String, File, String, Long, String, String, String, int, int) - Method in class org.cdlib.mrt.core.StorageAddClient: Send a multipart storage add request
sendAddPost(String, int, Identifier, String, String, File, String, Long, String, String, String) - Method in class org.cdlib.mrt.core.StorageAddClient
sendIngest(URL, String, File) - Method in class org.cdlib.mrt.tools.loader.BatchLoader: Send constructed request to ingest
SENDINGEST - Static variable in class org.cdlib.mrt.tools.loader.BatchLoader
sendIngestMultipart(String, URL, File, String, String) - Method in class org.cdlib.mrt.tools.loader.BatchLoader: Send ingest request
sequenceColumns(String) - Method in class org.cdlib.mrt.core.Checkm: Build tables with sequencing of known columns
serial - Enum constant in enum org.cdlib.mrt.formatter.FormatInfo
serial - Enum constant in enum org.cdlib.mrt.formatter.FormatterInf.Format
serial - Enum constant in enum org.cdlib.mrt.formatter.FormatType
serialize(Serializable, File) - Static method in class org.cdlib.mrt.utility.SerializeUtil: Write serialized object to file
serialize(Serializable, OutputStream) - Static method in class org.cdlib.mrt.utility.SerializeUtil: Take serializable object and output to stream
SerializeUtil - Class in org.cdlib.mrt.utility: Serialize utility functions
SerializeUtil() - Constructor for class org.cdlib.mrt.utility.SerializeUtil
ServiceStatus - Enum in org.cdlib.mrt.core: Status of a specific service
set(boolean) - Method in class org.cdlib.mrt.core.PingState: Set system values in ping response
set(String, long) - Method in class org.cdlib.mrt.utility.TallyTable: set tally value
set(Properties, String, String) - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
setActualCnt(int) - Method in class org.cdlib.mrt.cloud.VersionMap
setActualSize(long) - Method in class org.cdlib.mrt.cloud.VersionMap
setAddBytes(Long) - Method in class org.cdlib.mrt.log.utility.AddStateEntry
setAddFiles(Long) - Method in class org.cdlib.mrt.log.utility.AddStateEntry
setAddVersions(Integer) - Method in class org.cdlib.mrt.log.utility.AddStateEntry
sEtag(String) - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
setArk(String) - Method in class org.cdlib.mrt.log.utility.AddStateEntry
setArk(String) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
setAttempts(Integer) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
setAwsVersion(Integer) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
setBytes(Long) - Method in class org.cdlib.mrt.log.utility.AddStateEntry
setBytes(Long) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
setCloudComponent(FileComponent, boolean) - Method in class org.cdlib.mrt.cloud.VersionMap
setCol(String[], Checkm.ColMap, String) - Method in class org.cdlib.mrt.core.Checkm: Set col output display of content for column exists
setComponentFile(File) - Method in class org.cdlib.mrt.core.FileComponent: Set file for this Component
setComponents() - Method in class org.cdlib.mrt.tools.loader.LoaderManifest: Build a POST manifest
setComponents(int, List<FileComponent>) - Method in class org.cdlib.mrt.cloud.ManInfo
setCompressZip(boolean) - Method in class org.cdlib.mrt.utility.ArchiveBuilderBase
setContainer(String) - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
setContentType(String) - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
setCreated() - Method in class org.cdlib.mrt.core.FileComponent: set date/time of last modification using current Date
setCreated(DateState) - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
setCreated(DateState) - Method in class org.cdlib.mrt.core.FileComponent: set date/time of last modification
setCreator(String) - Method in class org.cdlib.mrt.core.FileComponent
setCurrent(int) - Method in class org.cdlib.mrt.cloud.VersionMap
setCurrentVersion(Integer) - Method in class org.cdlib.mrt.log.utility.AddStateEntry
setCurrentVersion(Integer) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
setDate(String) - Method in class org.cdlib.mrt.core.FileComponent
setDate(Date) - Method in class org.cdlib.mrt.core.DateState: Set Date value for this State
setDebug(boolean) - Static method in class org.cdlib.mrt.core.ThreadHandler
setDebug(boolean) - Method in class org.cdlib.mrt.utility.TLockFile: turn on/off debugging level
setDebugDump(boolean) - Method in class org.cdlib.mrt.core.MessageDigest
setDefaultReturn(String) - Method in class org.cdlib.mrt.tools.DefaultConfigResolver
setDefaultReturn(String) - Method in interface org.cdlib.mrt.tools.UC3ConfigResolver
setDeleteBytes(Long) - Method in class org.cdlib.mrt.log.utility.AddStateEntry
setDeleteFileAfterCopy(boolean) - Method in class org.cdlib.mrt.utility.ArchiveBuilderBase
setDeleteFiles(Long) - Method in class org.cdlib.mrt.log.utility.AddStateEntry
setDeleteVersions(Integer) - Method in class org.cdlib.mrt.log.utility.AddStateEntry
setDetail(String) - Method in exception org.cdlib.mrt.utility.TException: set the String detail message to give more information on an error
setDetail(String) - Method in exception org.cdlib.mrt.utility.TRuntimeException: set the String detail message to give more information on an error
setDigest(MessageDigest) - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
setDurationMs(Long) - Method in class org.cdlib.mrt.log.utility.AddStateEntry
setDurationMs(Long) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
setEntry(OutputStream, File) - Method in class org.cdlib.mrt.utility.ArchiveBuilder: Move file to archive
setEntry(OutputStream, File) - Method in class org.cdlib.mrt.utility.ArchiveBuilderBase: Move file to archive
setEtag(String) - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
setException(String) - Static method in class org.cdlib.mrt.core.ValidateStorageCmdParms
setFile(File) - Method in class org.cdlib.mrt.core.FileContent: Set File
setFile(File) - Method in class org.cdlib.mrt.core.Manifest: Set manifest file as saved buffered reader
setFile(FileComponent) - Method in class org.cdlib.mrt.cloud.ManifestSAX
setFileCnt(int) - Method in class org.cdlib.mrt.utility.DirectoryStats: set number of files
setFileComponent(FileComponent) - Method in interface org.cdlib.mrt.core.FileComponentContentInf: Set FileState
setFileComponent(FileComponent) - Method in class org.cdlib.mrt.core.ManifestRowCheckmAbs
setFileDisposition(String) - Method in class org.cdlib.mrt.core.FileContent
setFileID(String) - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
setFileID(String) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
setFiles(Long) - Method in class org.cdlib.mrt.log.utility.AddStateEntry
setFiles(Long) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
setFileSize(long) - Method in class org.cdlib.mrt.utility.DirectoryStats: set accumulated size of files
setFileState(FileComponent) - Method in class org.cdlib.mrt.core.FileContent: Set FileState value
setFirstMessageDigest(String, String) - Method in class org.cdlib.mrt.core.FileComponent: Save a new MessageDigest for this file as only digest
setFormatterType(FormatterInf.Format) - Method in class org.cdlib.mrt.formatter.FormatterAbs
setFromMetaProperties(Properties) - Method in class org.cdlib.mrt.cloud.CloudProperties
setHeaders(String[]) - Method in class org.cdlib.mrt.core.Checkm: Process the local headers to define row organization and content
setHttpServletRequest(HttpServletRequest) - Method in class org.cdlib.mrt.utility.TFrame: save servlet requeest
setIdentifier(String) - Method in class org.cdlib.mrt.core.FileComponent: Set file Name
setInputStream(InputStream) - Method in class org.cdlib.mrt.core.FileContent: Set InputStream
setInputStream(InputStream) - Method in class org.cdlib.mrt.core.Manifest: Convert input stream to buffered reader
setKey(String) - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
setKey(String) - Method in class org.cdlib.mrt.log.utility.AddStateEntry
setKey(String) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
setLastAddVersion(DateState) - Method in class org.cdlib.mrt.cloud.VersionMap
setLastDeleteObject(DateState) - Method in class org.cdlib.mrt.cloud.VersionMap
setLastDeleteVersion(DateState) - Method in class org.cdlib.mrt.cloud.VersionMap
setLastModified(String) - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
setLastModifiedDate(String) - Method in class org.cdlib.mrt.core.FileComponent: set date/time of last modification using the Iso date format as String
setList() - Method in class org.cdlib.mrt.utility.ListProcessorThreads
setLocalID(String) - Method in class org.cdlib.mrt.core.FileComponent: set localID value
setLocalids(String) - Method in class org.cdlib.mrt.log.utility.AddStateEntry
setLocalids(String) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
setLocalProfile(String) - Method in class org.cdlib.mrt.core.Checkm
setLock() - Method in class org.cdlib.mrt.utility.TLockFile: set the lock - attempt to write lock file - reread lock - if my lock then lock is active - otherwise lock is inactive
setLoggerLevel(String, String) - Static method in class org.cdlib.mrt.log.utility.Log4j2Util
setLoggerLevel(String, Level) - Static method in class org.cdlib.mrt.log.utility.Log4j2Util
setMessageDigests(HashSet<MessageDigest>) - Method in class org.cdlib.mrt.core.FileComponent
setMimeType(String) - Method in class org.cdlib.mrt.core.FileComponent: Set MimeType
setModsNS(String) - Static method in class org.cdlib.mrt.core.DC: Set a V3 name space in the MODS xml
setNode(int) - Method in class org.cdlib.mrt.cloud.VersionMap
setObject() - Method in class org.cdlib.mrt.cloud.ManifestSAX
setObjectID(Identifier) - Method in class org.cdlib.mrt.cloud.VersionMap
setObjectID(Identifier) - Method in class org.cdlib.mrt.core.ComponentContent
setObjectID(Identifier) - Method in class org.cdlib.mrt.log.utility.AddStateEntry
setObjectID(Identifier) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
setOriginalActualCount(int) - Method in class org.cdlib.mrt.cloud.VersionMap
setOriginalActualSize(long) - Method in class org.cdlib.mrt.cloud.VersionMap
setOriginalFileCount(int) - Method in class org.cdlib.mrt.cloud.VersionMap
setOriginalLastAddVersion(DateState) - Method in class org.cdlib.mrt.cloud.VersionMap
setOriginalLastDeleteVersion(DateState) - Method in class org.cdlib.mrt.cloud.VersionMap
setOriginalTotalSize(long) - Method in class org.cdlib.mrt.cloud.VersionMap
setOriginalVersionCnt(int) - Method in class org.cdlib.mrt.cloud.VersionMap
setOutputStream(OutputStream) - Method in class org.cdlib.mrt.utility.ArchiveBuilder: Call back routine for setting archive output stream type: tar, tar.gz, zip
setOutputStream(OutputStream) - Method in class org.cdlib.mrt.utility.ArchiveBuilder.Tar
setOutputStream(OutputStream) - Method in class org.cdlib.mrt.utility.ArchiveBuilder.TarGZ
setOutputStream(OutputStream) - Method in class org.cdlib.mrt.utility.ArchiveBuilder.Zip
setOutputStream(OutputStream) - Method in class org.cdlib.mrt.utility.ArchiveBuilderBase: Call back routine for setting archive output stream type: tar, tar.gz, zip
setOutputStream(OutputStream) - Method in class org.cdlib.mrt.utility.ArchiveBuilderBase.Tar
setOutputStream(OutputStream) - Method in class org.cdlib.mrt.utility.ArchiveBuilderBase.TarGZ
setOutputStream(OutputStream) - Method in class org.cdlib.mrt.utility.ArchiveBuilderBase.Zip
setOwner(String) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
setOwnerID(Identifier) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
setParms(Transformer, Hashtable) - Static method in class org.cdlib.mrt.utility.XSLTUtil: set transform parameters based on url query
setPath(String) - Method in class org.cdlib.mrt.tools.DefaultConfigResolver
setPool() - Method in class org.cdlib.mrt.db.DPRFileDB
setPrefix(String) - Method in class org.cdlib.mrt.core.Checkm: Parse prefix line
setPrettyJson(boolean) - Method in class org.cdlib.mrt.tools.YamlParser
setPrimaryID(String) - Method in class org.cdlib.mrt.core.FileComponent: set primaryID value
setProcessNode(Integer) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
setProcessNode(Long) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
setProp(Properties, String, String) - Static method in class org.cdlib.mrt.utility.ZooCodeUtil
setProperties(Properties) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
setProperty(String, String) - Method in class org.cdlib.mrt.cloud.CloudProperties
setProperty(String, String) - Method in class org.cdlib.mrt.utility.MProperties
setProperty(String, String) - Method in class org.cdlib.mrt.utility.TFrame: Sets a framework property and adds it if it doesn't already exist
setRootLevel(String) - Static method in class org.cdlib.mrt.log.utility.Log4j2Util
setRootLevel(Level) - Static method in class org.cdlib.mrt.log.utility.Log4j2Util
setRow(String) - Method in class org.cdlib.mrt.core.ManifestRowCheckmAbs
setRow(String) - Method in interface org.cdlib.mrt.core.ManifestRowInf: Process Manifest line.
setRow(FileComponent, String) - Method in class org.cdlib.mrt.core.Checkm: From manifest line parse out fileComponent elements and set those values in fileComponent
setService(String) - Method in class org.cdlib.mrt.log.utility.AddStateEntry
setService(String) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
setServiceProcess(String) - Method in class org.cdlib.mrt.log.utility.AddStateEntry
setServiceProcess(String) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
setShutdown(boolean) - Method in class org.cdlib.mrt.core.ThreadHandler
setSize(long) - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
setSize(long) - Method in class org.cdlib.mrt.core.FileComponent: File size
setSize(String) - Method in class org.cdlib.mrt.core.FileComponent: File size as string
setSizeChecksum(InputStream, String) - Method in class org.cdlib.mrt.utility.MessageDigestValue: Get size and checksum for newer checksum types
setSizeChecksum32(Checksum, InputStream) - Method in class org.cdlib.mrt.utility.MessageDigestValue: Create checksums for older types: CRC32 and Adler32
setSourceNode(Integer) - Method in class org.cdlib.mrt.log.utility.AddStateEntry
setSourceNode(Integer) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
setSourceNode(Long) - Method in class org.cdlib.mrt.log.utility.AddStateEntry
setSourceNode(Long) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
setSsmPath(String) - Method in class org.cdlib.mrt.tools.DefaultConfigResolver
setSsmPath(String) - Method in interface org.cdlib.mrt.tools.UC3ConfigResolver
setStatus(String) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
setStorageBase(String) - Method in class org.cdlib.mrt.cloud.VersionMap
setStorageClass(String) - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
setTargetNode(Long) - Method in class org.cdlib.mrt.log.utility.AddStateEntry
setTargetNode(Long) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
setTempGet(URL, long, int, LoggerInf) - Static method in class org.cdlib.mrt.utility.HttpGet
setTException(TExceptionEnum, String, Exception) - Method in exception org.cdlib.mrt.utility.TException: Set exception content based on whether a message or remote exception was provided.
setTException(TExceptionEnum, String, Exception) - Method in exception org.cdlib.mrt.utility.TRuntimeException
setTika(FileComponent, File, String) - Method in class org.cdlib.mrt.core.Tika: Set mime type using Tika
setTika(FileComponent, InputStream, String) - Method in class org.cdlib.mrt.core.Tika: Set mime type using Tika
setTitle(String) - Method in class org.cdlib.mrt.core.FileComponent
setTotalCnt(int) - Method in class org.cdlib.mrt.cloud.VersionMap
setTotalSize(long) - Method in class org.cdlib.mrt.cloud.VersionMap
setup(LoggerInf, boolean, boolean, boolean) - Static method in class org.cdlib.mrt.utility.DOMParser: get parser Contains logger
setUp() - Method in class org.cdlib.mrt.tools.loader.test.BatchLoaderTest
setUp() - Method in class org.cdlib.mrt.tools.loader.test.BatchManifestTest
setUp() - Method in class org.cdlib.mrt.tools.loader.test.StoreLoaderTest
setUpClass() - Static method in class org.cdlib.mrt.tools.loader.test.BatchLoaderTest
setUpClass() - Static method in class org.cdlib.mrt.tools.loader.test.BatchManifestTest
setUpClass() - Static method in class org.cdlib.mrt.tools.loader.test.StoreLoaderTest
setURL(String) - Method in class org.cdlib.mrt.core.FileComponent: Set link to file passed as string
setURL(URL) - Method in class org.cdlib.mrt.core.FileComponent: Set link to file
setVersion(int) - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
setVersion(Integer) - Method in class org.cdlib.mrt.log.utility.AddStateEntry
setVersion(Integer) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
setVersionID(int) - Method in class org.cdlib.mrt.core.ComponentContent
setVersions(Integer) - Method in class org.cdlib.mrt.log.utility.AddStateEntry
setVersions(Integer) - Method in class org.cdlib.mrt.log.utility.AddStateEntryGen
SEVERE - Enum constant in enum org.cdlib.mrt.utility.LoggerInf.LogLevel
sFileID(String) - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
sha1 - Enum constant in enum org.cdlib.mrt.utility.MessageDigestType
sha256 - Enum constant in enum org.cdlib.mrt.utility.MessageDigestType
sha384 - Enum constant in enum org.cdlib.mrt.utility.MessageDigestType
sha512 - Enum constant in enum org.cdlib.mrt.utility.MessageDigestType
shutdown - Enum constant in enum org.cdlib.mrt.core.ProcessStatus
shutdown - Enum constant in enum org.cdlib.mrt.core.ServiceStatus
shutdown - Variable in class org.cdlib.mrt.core.ThreadHandler
shutdown() - Method in class org.cdlib.mrt.core.ThreadHandler
shutDown() - Method in class org.cdlib.mrt.db.DPRFileDB
shuttingdown - Enum constant in enum org.cdlib.mrt.core.ServiceStatus
size - Variable in class org.cdlib.mrt.cloud.CloudList.CloudEntry
size - Variable in class org.cdlib.mrt.cloud.ManInfo
size - Variable in class org.cdlib.mrt.core.FileComponent
size - Variable in class org.cdlib.mrt.core.ManifestBuild.PropInfo
size() - Method in class org.cdlib.mrt.cloud.CloudList
size() - Method in class org.cdlib.mrt.cloud.CloudProperties
size() - Method in class org.cdlib.mrt.cloud.VersionMap
size() - Method in class org.cdlib.mrt.core.ComponentContent
size() - Method in class org.cdlib.mrt.formatter.NSMap
size() - Method in class org.cdlib.mrt.utility.LinkedHashList
size() - Method in class org.cdlib.mrt.utility.TallyTable: number of tally items
SIZE - Variable in class org.cdlib.mrt.core.FileComponent
sizeMismatch - Enum constant in enum org.cdlib.mrt.core.FixityStatusType
sizeProp - Variable in class org.cdlib.mrt.core.ManifestBuild
sKey(String) - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
sLastModified(String) - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
solid_state - Enum constant in enum org.cdlib.mrt.core.StorageTypesEnum
SPLITDELIM - Variable in class org.cdlib.mrt.core.Checkm
SQL_EXCEPTION - Enum constant in enum org.cdlib.mrt.utility.TExceptionEnum
SQL_EXCEPTION(Exception) - Constructor for exception org.cdlib.mrt.utility.TException.SQL_EXCEPTION
SQL_EXCEPTION(Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.SQL_EXCEPTION
SQL_EXCEPTION(String) - Constructor for exception org.cdlib.mrt.utility.TException.SQL_EXCEPTION
SQL_EXCEPTION(String) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.SQL_EXCEPTION
SQL_EXCEPTION(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TException.SQL_EXCEPTION
SQL_EXCEPTION(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.SQL_EXCEPTION
sqlEsc(String) - Static method in class org.cdlib.mrt.utility.SQLUtil: escape the special characters needed for sql statements.
SQLUtil - Class in org.cdlib.mrt.utility: Framework MySQL common routines
SQLUtil() - Constructor for class org.cdlib.mrt.utility.SQLUtil
squeeze(String) - Static method in class org.cdlib.mrt.utility.StringUtil: squeeze the blanks from a string
squeeze(String, String) - Static method in class org.cdlib.mrt.utility.StringUtil: squeeze a set of characters from a string
squeezeControl(String) - Static method in class org.cdlib.mrt.utility.StringUtil
squeezeHeader(String, String) - Static method in class org.cdlib.mrt.core.Checkm
sSize(long) - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
ssmClient - Variable in class org.cdlib.mrt.tools.SSMConfigResolver
SSMConfigResolver - Class in org.cdlib.mrt.tools
SSMConfigResolver() - Constructor for class org.cdlib.mrt.tools.SSMConfigResolver
SSMConfigResolver(String) - Constructor for class org.cdlib.mrt.tools.SSMConfigResolver
sStorageClass(String) - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
stackTrace(Throwable) - Static method in class org.cdlib.mrt.utility.StringUtil: stackTrace returns the stack trace for the exception passed.
staleDate - Variable in class org.cdlib.mrt.utility.TLockFile.LockContent
start(String) - Static method in class org.cdlib.mrt.utility.TimerUtil
start(LoggerInf, String) - Static method in class org.cdlib.mrt.utility.TimerUtil
startElement(String, String, String, Attributes) - Method in class org.cdlib.mrt.cloud.ManifestSAX
startEventt - Variable in class org.cdlib.mrt.utility.TimerUtil
startThreads() - Method in class org.cdlib.mrt.utility.ListProcessorThreads: Start threads to a maximum of processThreadCnt Check to see if any active threads and adjust count based on how many are still active.
Stat(long, long, String) - Constructor for class org.cdlib.mrt.utility.TimerUtil.Stat
state - Variable in class org.cdlib.mrt.formatter.XMLMapper
StateInf - Interface in org.cdlib.mrt.utility: This interface is used to identify a State class that is supported for reflective formatting.
stateS - Variable in class org.cdlib.mrt.formatter.XMLMapper
StateStringInf - Interface in org.cdlib.mrt.utility: This interface is used to identify a StateString class that is supported for reflective formatting.
status - Variable in class org.cdlib.mrt.core.ComponentContent
status - Variable in exception org.cdlib.mrt.utility.TException
status - Variable in exception org.cdlib.mrt.utility.TRuntimeException
STATUS - Static variable in class org.cdlib.mrt.core.ThreadHandler
statusMessage - Variable in class org.cdlib.mrt.core.ComponentContent
stop() - Method in class org.cdlib.mrt.utility.ListProcessorThreads: stop active threads
stopThreads() - Method in class org.cdlib.mrt.utility.ListProcessorThreads: Stick a stop thread object into queue for all active threads Thread dies as each is picked up.
StorageAddClient - Class in org.cdlib.mrt.core: AddClient for Storage
StorageAddClient() - Constructor for class org.cdlib.mrt.core.StorageAddClient
StorageAddClient(LoggerInf) - Constructor for class org.cdlib.mrt.core.StorageAddClient
storageBase - Variable in class org.cdlib.mrt.cloud.VersionData
storageBase - Variable in class org.cdlib.mrt.cloud.VersionMap
storageBase - Variable in class org.cdlib.mrt.tools.loader.StoreLoader
storageClass - Variable in class org.cdlib.mrt.cloud.CloudList.CloudEntry
StorageTypesEnum - Enum in org.cdlib.mrt.core: Specifies the "Media-type", and "Access-type" properties.
storeAddClient - Variable in class org.cdlib.mrt.tools.loader.StoreLoader
StoreLoader - Class in org.cdlib.mrt.tools.loader: Run a Storage load test
StoreLoader(TFrame) - Constructor for class org.cdlib.mrt.tools.loader.StoreLoader
StoreLoaderTest - Class in org.cdlib.mrt.tools.loader.test
StoreLoaderTest() - Constructor for class org.cdlib.mrt.tools.loader.test.StoreLoaderTest
stream2File(InputStream, File) - Static method in class org.cdlib.mrt.test.TestFileUtil: Create a file from a stream
stream2File(InputStream, File) - Static method in class org.cdlib.mrt.utility.FileUtil: Create a file from a stream
stream2File(InputStream, File, boolean) - Static method in class org.cdlib.mrt.utility.HttpGet: Create a file from a stream
stream2Stream(InputStream, OutputStream) - Static method in class org.cdlib.mrt.test.TestFileUtil: Copy input stream to output stream
stream2Stream(InputStream, OutputStream) - Static method in class org.cdlib.mrt.utility.FileUtil: Copy input stream to output stream
streamToByteArray(InputStream) - Static method in class org.cdlib.mrt.utility.StringUtil: convert ioStream to String
streamToString(InputStream, String) - Static method in class org.cdlib.mrt.utility.StringUtil: convert ioStream to String
string2File(File, String) - Static method in class org.cdlib.mrt.test.TestFileUtil: Create a file containing this string value (utf-8)
string2File(File, String) - Static method in class org.cdlib.mrt.utility.FileUtil: Create a file containing this string value (utf-8)
stringToStream(String, String) - Static method in class org.cdlib.mrt.utility.StringUtil: convert String to InputStream
StringUtil - Class in org.cdlib.mrt.utility: This class is a collection of String Utility functions not found in the String class.
StringUtil() - Constructor for class org.cdlib.mrt.utility.StringUtil
strip(String, String) - Static method in class org.cdlib.mrt.utility.StringUtil
stripNonAlphabetic(String) - Static method in class org.cdlib.mrt.utility.StringUtil: stripNonAlphabetic remove all non-alphabetics
stubFromManList(ManInfo, int) - Method in class org.cdlib.mrt.cloud.VersionMap
stubFromVersions(int) - Method in class org.cdlib.mrt.cloud.VersionMap
stubVersion(int) - Method in class org.cdlib.mrt.cloud.VersionMap
SUBMIT - Static variable in class org.cdlib.mrt.tools.loader.StoreLoader
subset - Variable in class org.cdlib.mrt.cloud.MatchMap
substitute(String, String, String[]) - Static method in class org.cdlib.mrt.utility.RegexUtil: Based on Perl substitute - constructs a response string using the paranthetical subpatterns
substitute(String, String, String[], int) - Static method in class org.cdlib.mrt.utility.RegexUtil: Based on Perl substitute - constructs a response string using the paranthetical subpatterns
subtract(DirectoryStats) - Method in class org.cdlib.mrt.utility.DirectoryStats: Subtract other DirectoryStats from this status
suspendEncoding - Variable in class org.cdlib.mrt.security.Base64.OutputStream
suspendEncoding() - Method in class org.cdlib.mrt.security.Base64.OutputStream: Suspends encoding of the stream.
sVersion(int) - Method in class org.cdlib.mrt.cloud.CloudList.CloudEntry
systemUnavailable - Enum constant in enum org.cdlib.mrt.core.FixityStatusType

T

tally - Variable in class org.cdlib.mrt.core.PingState
TallyTable - Class in org.cdlib.mrt.utility: Generalized counting queue Copied - DLoy
TallyTable() - Constructor for class org.cdlib.mrt.utility.TallyTable
tar - Enum constant in enum org.cdlib.mrt.formatter.FormatInfo
tar - Enum constant in enum org.cdlib.mrt.formatter.FormatType
tar - Enum constant in enum org.cdlib.mrt.utility.ArchiveBuilder.ArchiveType
tar - Enum constant in enum org.cdlib.mrt.utility.ArchiveBuilderBase.ArchiveType
Tar(File, File, LoggerInf) - Constructor for class org.cdlib.mrt.utility.ArchiveBuilder.Tar
Tar(File, File, LoggerInf) - Constructor for class org.cdlib.mrt.utility.ArchiveBuilderBase.Tar
Tar(File, File, LoggerInf, ArchiveBuilder.ArchiveType) - Constructor for class org.cdlib.mrt.utility.ArchiveBuilder.Tar
Tar(File, File, LoggerInf, ArchiveBuilderBase.ArchiveType) - Constructor for class org.cdlib.mrt.utility.ArchiveBuilderBase.Tar
Tar(File, OutputStream, LoggerInf) - Constructor for class org.cdlib.mrt.utility.ArchiveBuilder.Tar
Tar(File, OutputStream, LoggerInf) - Constructor for class org.cdlib.mrt.utility.ArchiveBuilderBase.Tar
Tar(File, OutputStream, LoggerInf, ArchiveBuilder.ArchiveType) - Constructor for class org.cdlib.mrt.utility.ArchiveBuilder.Tar
Tar(File, OutputStream, LoggerInf, ArchiveBuilderBase.ArchiveType) - Constructor for class org.cdlib.mrt.utility.ArchiveBuilderBase.Tar
targz - Enum constant in enum org.cdlib.mrt.formatter.FormatInfo
targz - Enum constant in enum org.cdlib.mrt.formatter.FormatType
targz - Enum constant in enum org.cdlib.mrt.utility.ArchiveBuilder.ArchiveType
targz - Enum constant in enum org.cdlib.mrt.utility.ArchiveBuilderBase.ArchiveType
TarGZ(File, File, LoggerInf) - Constructor for class org.cdlib.mrt.utility.ArchiveBuilder.TarGZ
TarGZ(File, File, LoggerInf) - Constructor for class org.cdlib.mrt.utility.ArchiveBuilderBase.TarGZ
TarGZ(File, OutputStream, LoggerInf) - Constructor for class org.cdlib.mrt.utility.ArchiveBuilder.TarGZ
TarGZ(File, OutputStream, LoggerInf) - Constructor for class org.cdlib.mrt.utility.ArchiveBuilderBase.TarGZ
tarOutputStream - Variable in class org.cdlib.mrt.utility.ArchiveBuilder.Tar
tarOutputStream - Variable in class org.cdlib.mrt.utility.ArchiveBuilderBase.Tar
tearDown() - Method in class org.cdlib.mrt.tools.loader.test.BatchLoaderTest
tearDown() - Method in class org.cdlib.mrt.tools.loader.test.BatchManifestTest
tearDown() - Method in class org.cdlib.mrt.tools.loader.test.StoreLoaderTest
tearDownClass() - Static method in class org.cdlib.mrt.tools.loader.test.BatchLoaderTest
tearDownClass() - Static method in class org.cdlib.mrt.tools.loader.test.BatchManifestTest
tearDownClass() - Static method in class org.cdlib.mrt.tools.loader.test.StoreLoaderTest
testArchiveType(String) - Static method in class org.cdlib.mrt.core.ValidateStorageCmdParms
testBase(String) - Static method in class org.cdlib.mrt.utility.ZooCodeUtil
testBatchIngest() - Method in class org.cdlib.mrt.tools.loader.test.BatchManifestTest
testBatchLoader() - Method in class org.cdlib.mrt.tools.loader.test.BatchLoaderTest
testContext(String) - Static method in class org.cdlib.mrt.core.ValidateStorageCmdParms
testCopy(File, File, LoggerInf) - Static method in class org.cdlib.mrt.core.Manifest
TestElement - Class in org.cdlib.mrt.log.test
TestElement() - Constructor for class org.cdlib.mrt.log.test.TestElement
testFileName(String) - Static method in class org.cdlib.mrt.core.ValidateStorageCmdParms
TestFileUtil - Class in org.cdlib.mrt.test: Generalized file utilities
TestFileUtil() - Constructor for class org.cdlib.mrt.test.TestFileUtil
testInput(String, File, LoggerInf) - Static method in class org.cdlib.mrt.core.Manifest
testLength - Variable in class org.cdlib.mrt.utility.HttpGet
TestLevel - Class in org.cdlib.mrt.log.test
TestLevel() - Constructor for class org.cdlib.mrt.log.test.TestLevel
testLocalID(String) - Static method in class org.cdlib.mrt.core.ValidateStorageCmdParms
testLog(LoggerInf) - Method in class org.cdlib.mrt.utility.FixityTests: Throw exception if log is null
testMatch(String) - Method in class org.cdlib.mrt.utility.PropertiesMapper
testNodeID(int) - Static method in class org.cdlib.mrt.core.ValidateStorageCmdParms
testObjectID(Identifier) - Static method in class org.cdlib.mrt.core.ValidateStorageCmdParms
testStoreLoader() - Method in class org.cdlib.mrt.tools.loader.test.StoreLoaderTest
TestUse - Class in org.cdlib.mrt.log.test
TestUse() - Constructor for class org.cdlib.mrt.log.test.TestUse
testVal(Checkm.ColMap, String[]) - Method in class org.cdlib.mrt.core.Checkm: Does content for this column exist
testVersionID(Integer) - Static method in class org.cdlib.mrt.core.ValidateStorageCmdParms
TException - Exception in org.cdlib.mrt.utility: mrt Exception
TException(Exception) - Constructor for exception org.cdlib.mrt.utility.TException: Degenerate case - where only an exceptin is provided.
TException(TExceptionEnum, Exception) - Constructor for exception org.cdlib.mrt.utility.TException: The constructor set the status code and no message
TException(TExceptionEnum, String) - Constructor for exception org.cdlib.mrt.utility.TException: This constuctor sets the message and status code associated with this exception.
TException(TExceptionEnum, String, Exception) - Constructor for exception org.cdlib.mrt.utility.TException: The constructor set the status code and no message
TException.CONCURRENT_UPDATE - Exception in org.cdlib.mrt.utility: CONCURRENT_UPDATE subclass See TExceptionEnum value for description
TException.EXTERNAL_SERVICE_UNAVAILABLE - Exception in org.cdlib.mrt.utility: EXTERNAL_SERVICE_UNAVAILABLE subclass See TExceptionEnum value for description
TException.FIXITY_CHECK_FAILS - Exception in org.cdlib.mrt.utility: FIXITY_CHECK_FAILS subclass See TExceptionEnum value for description
TException.GATEWAY_TIMEOUT - Exception in org.cdlib.mrt.utility: SQL_EXCEPTION subclass See TExceptionEnum value for description
TException.GENERAL_EXCEPTION - Exception in org.cdlib.mrt.utility: GENERAL_EXCEPTION subclass See TExceptionEnum value for description
TException.INVALID_ARCHITECTURE - Exception in org.cdlib.mrt.utility: INVALID_ARCHITECTURE subclass See TExceptionEnum value for description
TException.INVALID_CONFIGURATION - Exception in org.cdlib.mrt.utility: INVALID_CONFIGURATION subclass See TExceptionEnum value for description
TException.INVALID_DATA_FORMAT - Exception in org.cdlib.mrt.utility: INVALID_DATA_FORMAT subclass See TExceptionEnum value for description
TException.INVALID_OR_MISSING_PARM - Exception in org.cdlib.mrt.utility: INVALID_OR_MISSING_PARM subclass See TExceptionEnum value for description
TException.LOCKING_ERROR - Exception in org.cdlib.mrt.utility: LOCKING_ERROR subclass See TExceptionEnum value for description
TException.NEARLINE_RESTORE_IN_PROCESS - Exception in org.cdlib.mrt.utility: SQL_EXCEPTION subclass See TExceptionEnum value for description
TException.REMOTE_IO_SERVICE_EXCEPTION - Exception in org.cdlib.mrt.utility: Attempt to read or write to remote external IO service fails
TException.REQUEST_ELEMENT_UNSUPPORTED - Exception in org.cdlib.mrt.utility: REQUEST_ELEMENT_UNSUPPORTED subclass See TExceptionEnum value for description
TException.REQUEST_INVALID - Exception in org.cdlib.mrt.utility: REQUEST_INVALID subclass See TExceptionEnum value for description
TException.REQUEST_ITEM_EXISTS - Exception in org.cdlib.mrt.utility: REQUEST_ITEM_EXISTS subclass See TExceptionEnum value for description
TException.REQUESTED_ITEM_NOT_FOUND - Exception in org.cdlib.mrt.utility: REQUESTED_ITEM_NOT_FOUND subclass See TExceptionEnum value for description
TException.SQL_EXCEPTION - Exception in org.cdlib.mrt.utility: SQL_EXCEPTION subclass See TExceptionEnum value for description
TException.UNIMPLEMENTED_CODE - Exception in org.cdlib.mrt.utility: UNIMPLEMENTED_CODE subclass See TExceptionEnum value for description
TException.USER_NOT_AUTHENTICATED - Exception in org.cdlib.mrt.utility: USER_NOT_AUTHENTICATED subclass See TExceptionEnum value for description
TException.USER_NOT_AUTHORIZED - Exception in org.cdlib.mrt.utility: USER_NOT_AUTHORIZED subclass See TExceptionEnum value for description
TExceptionEnum - Enum in org.cdlib.mrt.utility: Enumeration of exception types with description and http status value
TFileLogger - Class in org.cdlib.mrt.utility: Stores informational and error messages in a sequential file.
TFileLogger(String, int, int) - Constructor for class org.cdlib.mrt.utility.TFileLogger
TFileLogger(String, String, Properties) - Constructor for class org.cdlib.mrt.utility.TFileLogger
TFileLogger(String, LoggerInf.LogLevel, LoggerInf.LogLevel) - Constructor for class org.cdlib.mrt.utility.TFileLogger
tFrame - Variable in class org.cdlib.mrt.utility.TFrameInit
TFrame - Class in org.cdlib.mrt.utility
TFrame(String[]) - Constructor for class org.cdlib.mrt.utility.TFrame: Constructs a framework, loading properties from one or more property files.
TFrame(String[], String) - Constructor for class org.cdlib.mrt.utility.TFrame: Constructs a framework, loading properties from one or more property files.
TFrame(String[], String, String) - Constructor for class org.cdlib.mrt.utility.TFrame: Constructs a framework, loading properties from one or more property files.
TFrameComponent - Interface in org.cdlib.mrt.utility: Defines behavior of classes that can be registered with and initialized by the framework.
TFrameInit - Class in org.cdlib.mrt.utility: Using ServletConfig initialize TFRame for properties extraction
TFrameInit(ServletConfig, String) - Constructor for class org.cdlib.mrt.utility.TFrameInit: Check InitParameters from web.xml to discover Properties files then build TFrame properties resolver
threadCnt - Variable in class org.cdlib.mrt.core.ThreadHandler
ThreadHandler - Class in org.cdlib.mrt.core: Run fixity
ThreadHandler(long, int, LoggerInf) - Constructor for class org.cdlib.mrt.core.ThreadHandler
threads - Variable in class org.cdlib.mrt.core.ThreadHandler
Tika - Class in org.cdlib.mrt.core: Container class for Storage ERC content
Tika(LoggerInf) - Constructor for class org.cdlib.mrt.core.Tika
timeMil - Variable in class org.cdlib.mrt.utility.TimerUtil.Stat
timeout - Variable in class org.cdlib.mrt.utility.HttpGet
TimerUtil - Class in org.cdlib.mrt.utility: Format: | ***TIMEUTIL*** | | <START | STOP > | |
TimerUtil(File) - Constructor for class org.cdlib.mrt.utility.TimerUtil
TimerUtil.Stat - Class in org.cdlib.mrt.utility
title - Enum constant in enum org.cdlib.mrt.core.Checkm.ColMap
title - Variable in class org.cdlib.mrt.core.FileComponent
title - Variable in class org.cdlib.mrt.tools.loader.LoaderInfo
TLockFile - Class in org.cdlib.mrt.utility: Propriety locking class.
TLockFile(File, String) - Constructor for class org.cdlib.mrt.utility.TLockFile: Constructor
TLockFile(File, String, Integer) - Constructor for class org.cdlib.mrt.utility.TLockFile
TLockFile.LockContent - Class in org.cdlib.mrt.utility: class containing lock information
toArchive - Variable in class org.cdlib.mrt.utility.ArchiveBuilder
toArchive - Variable in class org.cdlib.mrt.utility.ArchiveBuilderBase
toByteArray(String) - Static method in class org.cdlib.mrt.utility.MessageDigestValue
toDate(String) - Method in class org.cdlib.mrt.cloud.ManifestSAX
toHex(byte[]) - Static method in class org.cdlib.mrt.utility.StringUtil: toHex (byte []) returns the passed byte array in hexadecimal
toHex(byte[], int) - Static method in class org.cdlib.mrt.utility.StringUtil: toHex (byte []) returns the passed byte array in hexadecimal
toHex(String) - Static method in class org.cdlib.mrt.utility.StringUtil: toHex (String) returns the passed string in hexadecimal
toHexString(byte[]) - Static method in class org.cdlib.mrt.utility.MessageDigestValue
toID(String) - Method in class org.cdlib.mrt.cloud.ManifestSAX
toInt(String) - Method in class org.cdlib.mrt.cloud.ManifestSAX
toLong(String) - Method in class org.cdlib.mrt.cloud.ManifestSAX
toPropDate(String) - Method in class org.cdlib.mrt.cloud.ManifestSAX
toPropID(String) - Method in class org.cdlib.mrt.cloud.ManifestSAX
toPropInt(String) - Method in class org.cdlib.mrt.cloud.ManifestSAX
toPropLong(String) - Method in class org.cdlib.mrt.cloud.ManifestSAX
toString() - Method in class org.cdlib.mrt.cloud.CloudProperties
toString() - Method in enum org.cdlib.mrt.core.Checkm.Prefix
toString() - Method in class org.cdlib.mrt.core.DateState: Default toString to Iso format date
toString() - Method in enum org.cdlib.mrt.core.FixityStatusType
toString() - Method in class org.cdlib.mrt.core.Identifier
toString() - Method in class org.cdlib.mrt.core.MessageDigest
toString() - Method in exception org.cdlib.mrt.utility.TException: toString returns this exception as a string
toString() - Method in class org.cdlib.mrt.utility.TLockFile.LockContent
toString() - Method in exception org.cdlib.mrt.utility.TRuntimeException: toString returns this exception as a string
totalActualSize - Variable in class org.cdlib.mrt.cloud.VersionMap.VersionStats
TOTALBYTES - Variable in class org.cdlib.mrt.utility.ListProcessorBase
totalCnt - Variable in class org.cdlib.mrt.cloud.VersionMap
totalSize - Variable in class org.cdlib.mrt.cloud.VersionMap
totalSize - Variable in class org.cdlib.mrt.cloud.VersionMap.VersionStats
TOTALTIME - Variable in class org.cdlib.mrt.utility.ListProcessorBase
totSize - Variable in class org.cdlib.mrt.tools.loader.LoaderManifest
trace(String) - Method in class org.cdlib.mrt.db.DBConnectionPool
tran(String, Map<Character, Character>) - Static method in class org.cdlib.mrt.utility.FileTrans: Translate directory name using translation Map
transform(File) - Method in class org.cdlib.mrt.formatter.JSONFormatter
transform(File) - Method in class org.cdlib.mrt.formatter.XHTMLFormatter
translate() - Method in class org.cdlib.mrt.utility.FileTrans
trimBlanks(String) - Method in class org.cdlib.mrt.core.Checkm: trim leading and trailing blanks
TRuntimeException - Exception in org.cdlib.mrt.utility: mrt Exception
TRuntimeException(TExceptionEnum, Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException: The constructor set the status code and no message
TRuntimeException(TExceptionEnum, String) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException: This constuctor sets the message and status code associated with this exception.
TRuntimeException(TExceptionEnum, String, Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException: The constructor set the status code and no message
TRuntimeException.CONCURRENT_UPDATE - Exception in org.cdlib.mrt.utility: CONCURRENT_UPDATE subclass See TExceptionEnum value for description
TRuntimeException.EXTERNAL_SERVICE_UNAVAILABLE - Exception in org.cdlib.mrt.utility: EXTERNAL_SERVICE_UNAVAILABLE subclass See TExceptionEnum value for description
TRuntimeException.FIXITY_CHECK_FAILS - Exception in org.cdlib.mrt.utility: FIXITY_CHECK_FAILS subclass See TExceptionEnum value for description
TRuntimeException.GENERAL_EXCEPTION - Exception in org.cdlib.mrt.utility: GENERAL_EXCEPTION subclass See TExceptionEnum value for description
TRuntimeException.INVALID_ARCHITECTURE - Exception in org.cdlib.mrt.utility: INVALID_ARCHITECTURE subclass See TExceptionEnum value for description
TRuntimeException.INVALID_CONFIGURATION - Exception in org.cdlib.mrt.utility: INVALID_CONFIGURATION subclass See TExceptionEnum value for description
TRuntimeException.INVALID_DATA_FORMAT - Exception in org.cdlib.mrt.utility: INVALID_DATA_FORMAT subclass See TExceptionEnum value for description
TRuntimeException.INVALID_OR_MISSING_PARM - Exception in org.cdlib.mrt.utility: INVALID_OR_MISSING_PARM subclass See TExceptionEnum value for description
TRuntimeException.LOCKING_ERROR - Exception in org.cdlib.mrt.utility: LOCKING_ERROR subclass See TExceptionEnum value for description
TRuntimeException.REQUEST_ELEMENT_UNSUPPORTED - Exception in org.cdlib.mrt.utility: REQUEST_ELEMENT_UNSUPPORTED subclass See TExceptionEnum value for description
TRuntimeException.REQUEST_INVALID - Exception in org.cdlib.mrt.utility: REQUEST_INVALID subclass See TExceptionEnum value for description
TRuntimeException.REQUEST_ITEM_EXISTS - Exception in org.cdlib.mrt.utility: REQUEST_ITEM_EXISTS subclass See TExceptionEnum value for description
TRuntimeException.REQUESTED_ITEM_NOT_FOUND - Exception in org.cdlib.mrt.utility: REQUESTED_ITEM_NOT_FOUND subclass See TExceptionEnum value for description
TRuntimeException.SQL_EXCEPTION - Exception in org.cdlib.mrt.utility: SQL_EXCEPTION subclass See TExceptionEnum value for description
TRuntimeException.UNIMPLEMENTED_CODE - Exception in org.cdlib.mrt.utility: UNIMPLEMENTED_CODE subclass See TExceptionEnum value for description
TRuntimeException.USER_NOT_AUTHENTICATED - Exception in org.cdlib.mrt.utility: USER_NOT_AUTHENTICATED subclass See TExceptionEnum value for description
TRuntimeException.USER_NOT_AUTHORIZED - Exception in org.cdlib.mrt.utility: USER_NOT_AUTHORIZED subclass See TExceptionEnum value for description
txt - Enum constant in enum org.cdlib.mrt.formatter.FormatInfo
txt - Enum constant in enum org.cdlib.mrt.formatter.FormatType
type - Variable in enum org.cdlib.mrt.core.Checkm.ColMap
type - Variable in enum org.cdlib.mrt.core.StorageTypesEnum
type - Variable in class org.cdlib.mrt.utility.Checksums.Digest
TypeFile - Class in org.cdlib.mrt.formatter
TypeFile() - Constructor for class org.cdlib.mrt.formatter.TypeFile

U

UC3ConfigResolver - Interface in org.cdlib.mrt.tools
UNIMPLEMENTED_CODE - Enum constant in enum org.cdlib.mrt.utility.TExceptionEnum
UNIMPLEMENTED_CODE(Exception) - Constructor for exception org.cdlib.mrt.utility.TException.UNIMPLEMENTED_CODE
UNIMPLEMENTED_CODE(Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.UNIMPLEMENTED_CODE
UNIMPLEMENTED_CODE(String) - Constructor for exception org.cdlib.mrt.utility.TException.UNIMPLEMENTED_CODE
UNIMPLEMENTED_CODE(String) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.UNIMPLEMENTED_CODE
UNIMPLEMENTED_CODE(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TException.UNIMPLEMENTED_CODE
UNIMPLEMENTED_CODE(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.UNIMPLEMENTED_CODE
unknown - Enum constant in enum org.cdlib.mrt.core.FixityStatusType
unknown - Enum constant in enum org.cdlib.mrt.core.ProcessStatus
unknown - Enum constant in enum org.cdlib.mrt.core.ServiceStatus
Unspecified - Enum constant in enum org.cdlib.mrt.core.Identifier.Namespace
UNSUPPORTED_FORMAT_TYPE - Enum constant in enum org.cdlib.mrt.utility.TExceptionEnum
unverified - Enum constant in enum org.cdlib.mrt.core.FixityStatusType
update(Connection, String, LoggerInf) - Static method in class org.cdlib.mrt.db.DBUtil
UPDATE_EXCEPTION - Enum constant in enum org.cdlib.mrt.utility.LoggerInf.LogLevel
updateDirectory(File, File) - Static method in class org.cdlib.mrt.test.TestFileUtil: Copy all files in a directory to another directory (will not overwrite)
updateDirectory(File, File) - Static method in class org.cdlib.mrt.utility.FileUtil: Copy all files in a directory to another directory (will not overwrite)
updateVersion(List<FileComponent>, String[]) - Method in class org.cdlib.mrt.cloud.VersionMap
upperCaseFirst(String) - Static method in class org.cdlib.mrt.utility.StringUtil: upperCaseFirst (String) returns the passed string with first char uppercased , e.g.
URI - Enum constant in enum org.cdlib.mrt.core.Identifier.Namespace
URL - Enum constant in enum org.cdlib.mrt.core.Identifier.Namespace
URL_SAFE - Static variable in class org.cdlib.mrt.security.Base64: Encode using Base64-like encoding that is URL- and Filename-safe as described in Section 4 of RFC3548: http://www.faqs.org/rfcs/rfc3548.html.
url2File(LoggerInf, String, File) - Static method in class org.cdlib.mrt.test.TestFileUtil: Get content referenced by a url and save in a file
url2File(LoggerInf, String, File) - Static method in class org.cdlib.mrt.utility.FileUtil: Get content referenced by a url and save in a file
url2File(LoggerInf, String, File, int) - Static method in class org.cdlib.mrt.test.TestFileUtil: Get content referenced by a url and save in a file
url2File(LoggerInf, String, File, int) - Static method in class org.cdlib.mrt.utility.FileUtil: Get content referenced by a url and save in a file
url2File(LoggerInf, URL, File) - Static method in class org.cdlib.mrt.test.TestFileUtil: Get content referenced by a url and save in a file
url2File(LoggerInf, URL, File) - Static method in class org.cdlib.mrt.utility.FileUtil: Get content referenced by a url and save in a file
url2File(LoggerInf, URL, File, int) - Static method in class org.cdlib.mrt.test.TestFileUtil: Get content referenced by a url and save in a file
url2File(LoggerInf, URL, File, int) - Static method in class org.cdlib.mrt.utility.FileUtil: Get content referenced by a url and save in a file
url2OutputStream(String, OutputStream, int) - Static method in class org.cdlib.mrt.test.TestFileUtil: Move url response to output stream
url2OutputStream(String, OutputStream, int) - Static method in class org.cdlib.mrt.utility.FileUtil: Move url response to output stream
url2Stream(String, long, long) - Method in class org.cdlib.mrt.utility.HttpGet
url2TempFile(LoggerInf, String) - Static method in class org.cdlib.mrt.test.TestFileUtil: get remote file
url2TempFile(LoggerInf, String) - Static method in class org.cdlib.mrt.utility.FileUtil: get remote file
URLEncoder - Class in org.cdlib.mrt.utility
URLEncoder() - Constructor for class org.cdlib.mrt.utility.URLEncoder
URN - Enum constant in enum org.cdlib.mrt.core.Identifier.Namespace
usage(String) - Static method in class org.cdlib.mrt.security.Base64: Prints command line usage.
USER_NOT_AUTHENTICATED - Enum constant in enum org.cdlib.mrt.utility.TExceptionEnum
USER_NOT_AUTHENTICATED(Exception) - Constructor for exception org.cdlib.mrt.utility.TException.USER_NOT_AUTHENTICATED
USER_NOT_AUTHENTICATED(Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.USER_NOT_AUTHENTICATED
USER_NOT_AUTHENTICATED(String) - Constructor for exception org.cdlib.mrt.utility.TException.USER_NOT_AUTHENTICATED
USER_NOT_AUTHENTICATED(String) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.USER_NOT_AUTHENTICATED
USER_NOT_AUTHENTICATED(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TException.USER_NOT_AUTHENTICATED
USER_NOT_AUTHENTICATED(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.USER_NOT_AUTHENTICATED
USER_NOT_AUTHORIZED - Enum constant in enum org.cdlib.mrt.utility.TExceptionEnum
USER_NOT_AUTHORIZED(Exception) - Constructor for exception org.cdlib.mrt.utility.TException.USER_NOT_AUTHORIZED
USER_NOT_AUTHORIZED(Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.USER_NOT_AUTHORIZED
USER_NOT_AUTHORIZED(String) - Constructor for exception org.cdlib.mrt.utility.TException.USER_NOT_AUTHORIZED
USER_NOT_AUTHORIZED(String) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.USER_NOT_AUTHORIZED
USER_NOT_AUTHORIZED(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TException.USER_NOT_AUTHORIZED
USER_NOT_AUTHORIZED(String, Exception) - Constructor for exception org.cdlib.mrt.utility.TRuntimeException.USER_NOT_AUTHORIZED

V

validate() - Method in class org.cdlib.mrt.formatter.NSMap
validate() - Method in class org.cdlib.mrt.utility.MrtConnection
validateContext(String) - Static method in class org.cdlib.mrt.core.ValidateStorageCmdParms: Validate context (ingest profile, access group ...)
validateFileName(String) - Static method in class org.cdlib.mrt.core.ValidateStorageCmdParms: Validate file name
validateLocalID(String) - Static method in class org.cdlib.mrt.core.ValidateStorageCmdParms: Validate local identifier
validateManInfo(ManInfo) - Method in class org.cdlib.mrt.cloud.VersionMap
validateNodeID(String) - Static method in class org.cdlib.mrt.core.ValidateStorageCmdParms: Validate and convert nodeID
validateObjectID(String) - Static method in class org.cdlib.mrt.core.ValidateStorageCmdParms: Validate and convert Object Identifier
validateSizeChecksum(String, String, long) - Method in class org.cdlib.mrt.utility.FixityTests: Get the download size and checksum for this file
ValidateStorageCmdParms - Class in org.cdlib.mrt.core: General validation methods command line info
ValidateStorageCmdParms() - Constructor for class org.cdlib.mrt.core.ValidateStorageCmdParms
validateVersion() - Method in class org.cdlib.mrt.cloud.VersionMap
validateVersionID(String) - Static method in class org.cdlib.mrt.core.ValidateStorageCmdParms: Validate and convert versionID
value - Variable in class org.cdlib.mrt.cloud.ManifestSAX
value - Variable in class org.cdlib.mrt.core.Identifier
value - Variable in class org.cdlib.mrt.core.MessageDigest
valueOf(int) - Static method in enum org.cdlib.mrt.utility.LoggerInf.LogLevel: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cdlib.mrt.core.Checkm.ColMap: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cdlib.mrt.core.Checkm.Prefix: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cdlib.mrt.core.DataciteConvert.StyleEnum: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cdlib.mrt.core.FixityStatusType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cdlib.mrt.core.Identifier.Namespace: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cdlib.mrt.core.ManifestRowAbs.ManifestType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cdlib.mrt.core.ProcessStatus: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cdlib.mrt.core.ServiceStatus: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cdlib.mrt.core.StorageTypesEnum: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cdlib.mrt.formatter.FormatInfo: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cdlib.mrt.formatter.FormatterInf.Format: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cdlib.mrt.formatter.FormatType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cdlib.mrt.utility.ArchiveBuilder.ArchiveType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cdlib.mrt.utility.ArchiveBuilderBase.ArchiveType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cdlib.mrt.utility.LoggerInf.LogLevel: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cdlib.mrt.utility.MessageDigestType: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.cdlib.mrt.utility.TExceptionEnum: Returns the enum constant of this type with the specified name.
valueOf(String, String) - Static method in enum org.cdlib.mrt.core.StorageTypesEnum: Match the Storage type to type and description
valueOf(Checkm.Prefix, String) - Static method in enum org.cdlib.mrt.core.Checkm.ColMap: get enumeration based on provided type, name and version
valueOfExtension(String) - Static method in enum org.cdlib.mrt.formatter.FormatInfo
valueOfExtension(String) - Static method in enum org.cdlib.mrt.formatter.FormatType
valueOfExtension(String) - Static method in enum org.cdlib.mrt.utility.ArchiveBuilder.ArchiveType
valueOfExtension(String) - Static method in enum org.cdlib.mrt.utility.ArchiveBuilderBase.ArchiveType
valueOfMimeType(String) - Static method in enum org.cdlib.mrt.formatter.FormatInfo: return MIME type of this format response
valueOfMimeType(String) - Static method in enum org.cdlib.mrt.formatter.FormatType: return MIME type of this format response
valueOfMimeType(String) - Static method in enum org.cdlib.mrt.utility.ArchiveBuilder.ArchiveType
valueOfMimeType(String) - Static method in enum org.cdlib.mrt.utility.ArchiveBuilderBase.ArchiveType
values() - Static method in enum org.cdlib.mrt.core.Checkm.ColMap: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cdlib.mrt.core.Checkm.Prefix: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cdlib.mrt.core.DataciteConvert.StyleEnum: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cdlib.mrt.core.FixityStatusType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cdlib.mrt.core.Identifier.Namespace: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cdlib.mrt.core.ManifestRowAbs.ManifestType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cdlib.mrt.core.ProcessStatus: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cdlib.mrt.core.ServiceStatus: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cdlib.mrt.core.StorageTypesEnum: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cdlib.mrt.formatter.FormatInfo: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cdlib.mrt.formatter.FormatterInf.Format: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cdlib.mrt.formatter.FormatType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cdlib.mrt.utility.ArchiveBuilder.ArchiveType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cdlib.mrt.utility.ArchiveBuilderBase.ArchiveType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cdlib.mrt.utility.LoggerInf.LogLevel: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cdlib.mrt.utility.MessageDigestType: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.cdlib.mrt.utility.TExceptionEnum: Returns an array containing the constants of this enum type, in the order they are declared.
verified - Enum constant in enum org.cdlib.mrt.core.FixityStatusType
version - Variable in class org.cdlib.mrt.cloud.CloudList.CloudEntry
version - Variable in enum org.cdlib.mrt.core.DataciteConvert.StyleEnum
VersionData - Class in org.cdlib.mrt.cloud: This object imports the formatTypes.xml and builds a local table of supported format types.
VersionData(URL, File, LoggerInf) - Constructor for class org.cdlib.mrt.cloud.VersionData
VersionData(VersionMap, File, LoggerInf) - Constructor for class org.cdlib.mrt.cloud.VersionData
VersionData(Identifier, String, int, File, LoggerInf) - Constructor for class org.cdlib.mrt.cloud.VersionData
VersionFileComponent() - Constructor for class org.cdlib.mrt.cloud.VersionMap.VersionFileComponent
versionID - Variable in class org.cdlib.mrt.cloud.ManInfo
versionID - Variable in class org.cdlib.mrt.cloud.VersionMap.VersionFileComponent
versionID - Variable in class org.cdlib.mrt.core.ComponentContent
versionID - Variable in class org.cdlib.mrt.tools.loader.LoaderInfo
versionMap - Variable in class org.cdlib.mrt.cloud.ManifestSAX
versionMap - Variable in class org.cdlib.mrt.cloud.ManifestStr
VersionMap - Class in org.cdlib.mrt.cloud: This object imports the formatTypes.xml and builds a local table of supported format types.
VersionMap(VersionMap) - Constructor for class org.cdlib.mrt.cloud.VersionMap
VersionMap(Identifier, LoggerInf) - Constructor for class org.cdlib.mrt.cloud.VersionMap
VersionMap.DeltaStats - Class in org.cdlib.mrt.cloud
VersionMap.VersionFileComponent - Class in org.cdlib.mrt.cloud
VersionMap.VersionStats - Class in org.cdlib.mrt.cloud
VersionMapUtil - Class in org.cdlib.mrt.cloud
VersionMapUtil() - Constructor for class org.cdlib.mrt.cloud.VersionMapUtil
VersionStats() - Constructor for class org.cdlib.mrt.cloud.VersionMap.VersionStats

W

WARNING - Enum constant in enum org.cdlib.mrt.utility.LoggerInf.LogLevel
whichLog4j2(String) - Static method in class org.cdlib.mrt.log.utility.Log4j2Util
WHITE_SPACE_ENC - Static variable in class org.cdlib.mrt.security.Base64
write(byte[], int, int) - Method in class org.cdlib.mrt.security.Base64.OutputStream: Calls Base64.OutputStream.write(int) repeatedly until len bytes are written.
write(int) - Method in class org.cdlib.mrt.security.Base64.OutputStream: Writes the byte to the output stream after converting to/from Base64 notation.
write(String) - Method in class org.cdlib.mrt.core.Manifest: Write this line to output
write(String, PrintStream) - Method in class org.cdlib.mrt.formatter.FormatterAbs: Used by formatter class to write to the display output
write(ManifestRowInf) - Method in class org.cdlib.mrt.core.Manifest: Write a line to output manifest
writeEOF() - Method in class org.cdlib.mrt.core.Manifest
writeHeaders() - Method in class org.cdlib.mrt.core.Manifest
writeLines(String[]) - Method in class org.cdlib.mrt.core.Manifest
writeln(String, PrintStream) - Method in class org.cdlib.mrt.formatter.FormatterAbs: Used by formatter class to write a line to the display output
writeStream(File, PrintStream) - Method in class org.cdlib.mrt.formatter.JSONFormatter
writeStream(File, PrintStream) - Method in class org.cdlib.mrt.formatter.XHTMLFormatter

X

xchange(String, String, String[]) - Static method in class org.cdlib.mrt.utility.StringUtil: xchange replaces all occurances of a String of characters for the corresponding string from an array of String.
xhtml - Enum constant in enum org.cdlib.mrt.formatter.FormatInfo
xhtml - Enum constant in enum org.cdlib.mrt.formatter.FormatterInf.Format
xhtml - Enum constant in enum org.cdlib.mrt.formatter.FormatType
XHTMLFormatter - Class in org.cdlib.mrt.formatter: XML output display formatter
XHTMLFormatter(String, LoggerInf) - Constructor for class org.cdlib.mrt.formatter.XHTMLFormatter
XHTMLFormatter(LoggerInf) - Constructor for class org.cdlib.mrt.formatter.XHTMLFormatter
xml - Enum constant in enum org.cdlib.mrt.formatter.FormatInfo
xml - Enum constant in enum org.cdlib.mrt.formatter.FormatterInf.Format
xml - Enum constant in enum org.cdlib.mrt.formatter.FormatType
xmlFormatter - Variable in class org.cdlib.mrt.formatter.JSONFormatter
xmlFormatter - Variable in class org.cdlib.mrt.formatter.XHTMLFormatter
XMLFormatter - Class in org.cdlib.mrt.formatter: XML output display formatter
XMLFormatter(String, LoggerInf) - Constructor for class org.cdlib.mrt.formatter.XMLFormatter
XMLFormatter(LoggerInf) - Constructor for class org.cdlib.mrt.formatter.XMLFormatter
XMLMapper - Class in org.cdlib.mrt.formatter: Provide mapping of State to header and namespaces Resource entries for XMLMapper take the form: [typename].header= (required) [typename].namespace= (optional - if not supplied then assumed empty or id provided) [typename].id.[property name]= (optional)
XMLMapper(String, StateInf) - Constructor for class org.cdlib.mrt.formatter.XMLMapper: State must be explicitly included match an instance to assign a type name The type name is used for matchin resource properties
XMLUtil - Class in org.cdlib.mrt.utility: This class is a collection of XML Utility functions.
XMLUtil() - Constructor for class org.cdlib.mrt.utility.XMLUtil
xslConvert(InputStream, InputStream, Hashtable, LoggerInf) - Static method in class org.cdlib.mrt.utility.XSLTUtil: Convert xml using an xslt stylesheet
xslConvert(InputStream, String, Hashtable, LoggerInf) - Static method in class org.cdlib.mrt.utility.XSLTUtil: Convert xml using an xslt stylesheet
xslConvert(String, String, Hashtable, LoggerInf) - Static method in class org.cdlib.mrt.utility.XSLTUtil
xslConvert(StreamSource, StreamSource, Hashtable, LoggerInf) - Static method in class org.cdlib.mrt.utility.XSLTUtil: Convert xml using an xslt stylesheet
XSLTUtil - Class in org.cdlib.mrt.utility: This class is a collection of XML Utility functions.
XSLTUtil() - Constructor for class org.cdlib.mrt.utility.XSLTUtil

Y

YamlParser - Class in org.cdlib.mrt.tools
YamlParser() - Constructor for class org.cdlib.mrt.tools.YamlParser
YamlParser(String) - Constructor for class org.cdlib.mrt.tools.YamlParser
YamlParser(UC3ConfigResolver) - Constructor for class org.cdlib.mrt.tools.YamlParser

Z

zip - Enum constant in enum org.cdlib.mrt.formatter.FormatInfo
zip - Enum constant in enum org.cdlib.mrt.formatter.FormatType
zip - Enum constant in enum org.cdlib.mrt.utility.ArchiveBuilder.ArchiveType
zip - Enum constant in enum org.cdlib.mrt.utility.ArchiveBuilderBase.ArchiveType
Zip(File, File, LoggerInf) - Constructor for class org.cdlib.mrt.utility.ArchiveBuilder.Zip
Zip(File, File, LoggerInf) - Constructor for class org.cdlib.mrt.utility.ArchiveBuilderBase.Zip
Zip(File, File, LoggerInf, ArchiveBuilder.ArchiveType) - Constructor for class org.cdlib.mrt.utility.ArchiveBuilder.Zip
Zip(File, File, LoggerInf, ArchiveBuilderBase.ArchiveType) - Constructor for class org.cdlib.mrt.utility.ArchiveBuilderBase.Zip
Zip(File, OutputStream, LoggerInf) - Constructor for class org.cdlib.mrt.utility.ArchiveBuilder.Zip
Zip(File, OutputStream, LoggerInf) - Constructor for class org.cdlib.mrt.utility.ArchiveBuilderBase.Zip
zipOutputStream - Variable in class org.cdlib.mrt.utility.ArchiveBuilder.Zip
zipOutputStream - Variable in class org.cdlib.mrt.utility.ArchiveBuilderBase.Zip
zipunc - Enum constant in enum org.cdlib.mrt.utility.ArchiveBuilderBase.ArchiveType
ZooCodeUtil - Class in org.cdlib.mrt.utility: Basic manager for Queuing Service
ZooCodeUtil() - Constructor for class org.cdlib.mrt.utility.ZooCodeUtil

_

_ORDERED_ALPHABET - Static variable in class org.cdlib.mrt.security.Base64: I don't get the point of this technique, but it is described here: http://www.faqs.org/qa/rfcc-1940.html.
_ORDERED_DECODABET - Static variable in class org.cdlib.mrt.security.Base64: Used in decoding the "ordered" dialect of Base64.
_STANDARD_DECODABET - Static variable in class org.cdlib.mrt.security.Base64: Translates a Base64 value to either its 6-bit reconstruction value or a negative number indicating some other meaning.
_URL_SAFE_ALPHABET - Static variable in class org.cdlib.mrt.security.Base64: Used in the URL- and Filename-safe dialect described in Section 4 of RFC3548: http://www.faqs.org/rfcs/rfc3548.html.
_URL_SAFE_DECODABET - Static variable in class org.cdlib.mrt.security.Base64: Used in decoding URL- and Filename-safe dialects of Base64.

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